Plasmid CP113398.1

Sequence

Nucleotide Information

Accession CP113398.1
Description MAG: Staphylococcus haemolyticus isolate 702 plasmid unnamed3, complete sequence
Source insd
Topology circular
Length 2362 bp
GC Content 0.31 %
Created at NCBI Dec. 6, 2022



Biosample

Curated Collection Information
Accession 30148944

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Russia,Saratov region
Original Query Type name
Coordinates (Lat/Lon) 52.27/43.77
Address Russia,Saratov region

ECOSYSTEM
Original Query bovine,mixed culture metagenome,metagenomic assembly,milk
Classification cell_culture,drink,food,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LT571451.1 See Comparison
NZ_CP013617.1 See Comparison
NZ_CP033783.1 See Comparison
NZ_CP133665.1 See Comparison
NZ_CP131673.1 See Comparison
NZ_KX011076.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_CP013617.1 See Comparison
CP052983.1 See Comparison
CP052961.1 See Comparison
CP113402.1 See Comparison
NZ_CP065198.1 See Comparison
CP102662.1 See Comparison
NZ_CP133665.1 See Comparison
NZ_LT571451.1 See Comparison
NZ_CP033783.1 See Comparison
NZ_CP131673.1 See Comparison
CP052983.1 See Comparison
NZ_KX011076.1 See Comparison
NZ_MN251857.1 See Comparison
CP052961.1 See Comparison
NZ_CP065198.1 See Comparison
CP102662.1 See Comparison
CP113402.1 See Comparison
NZ_LT571451.1 See Comparison
NZ_CP033783.1 See Comparison
NZ_CP013617.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_CP133665.1 See Comparison
NZ_CP131673.1 See Comparison
NZ_CP065198.1 See Comparison
NZ_KX011076.1 See Comparison
CP052983.1 See Comparison
CP052961.1 See Comparison
CP113402.1 See Comparison
CP102662.1 See Comparison
NZ_CP013617.1 See Comparison
NZ_LT571451.1 See Comparison
NZ_CP133665.1 See Comparison
NZ_CP033783.1 See Comparison
NZ_CP131673.1 See Comparison
CP052983.1 See Comparison
NZ_KX011076.1 See Comparison
NZ_MN251857.1 See Comparison
CP052961.1 See Comparison
CP102662.1 See Comparison
NZ_CP065198.1 See Comparison
CP113402.1 See Comparison
NZ_CP133665.1 See Comparison
NZ_LT571451.1 See Comparison
NZ_CP033783.1 See Comparison
NZ_CP013617.1 See Comparison
CP052983.1 See Comparison
NZ_CP131673.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_KX011076.1 See Comparison
CP052961.1 See Comparison
NZ_CP133665.1 See Comparison
NZ_CP065198.1 See Comparison
CP113402.1 See Comparison
CP113398.1 See Comparison
CP102662.1 See Comparison
NZ_CP013617.1 See Comparison
NZ_LT571451.1 See Comparison
NZ_CP033783.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_CP131673.1 See Comparison
NZ_KX011076.1 See Comparison
CP052983.1 See Comparison
CP052961.1 See Comparison
NZ_CP065198.1 See Comparison
NZ_CP013617.1 See Comparison
CP113402.1 See Comparison
CP102662.1 See Comparison
NZ_LT571451.1 See Comparison
NZ_CP133665.1 See Comparison
NZ_CP033783.1 See Comparison
CP052983.1 See Comparison
NZ_CP131673.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_KX011076.1 See Comparison
CP052961.1 See Comparison
NZ_CP065198.1 See Comparison
CP113402.1 See Comparison
CP102662.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2