Plasmid NZ_CP148796.1

Sequence

Nucleotide Information

Accession NZ_CP148796.1
Description Salmonella enterica subsp. enterica serovar Infantis strain Z1323HSL0030 plasmid pZ1323HSL0030-3, complete sequence
Source refseq
Topology circular
Length 5873 bp
GC Content 0.43 %
Created at NCBI April 5, 2024



Biosample

Curated Collection Information
Accession 40424071

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea
Original Query Type name
Coordinates (Lat/Lon) 36.56/127.94
Address South Korea

ECOSYSTEM
Original Query Homo sapiens,single cell
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148812.1 See Comparison
CP148885.1 See Comparison
CP148888.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison
NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148808.1 See Comparison
CP148885.1 See Comparison
CP148888.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
CP148885.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
CP148888.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison
CP148885.1 See Comparison
NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
CP148888.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison
NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148796.1 See Comparison
CP148885.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison
CP148888.1 See Comparison
NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
CP148885.1 See Comparison
CP148888.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore