Plasmid CP148888.1

Sequence

Nucleotide Information

Accession CP148888.1
Description Salmonella enterica subsp. enterica serovar Infantis strain Z1322HSL0007 plasmid pZ1322HSL0007-3, complete sequence
Source insd
Topology circular
Length 5873 bp
GC Content 0.43 %
Created at NCBI March 25, 2024



Assembly

Genome Data Information

Accession GCA_037802055.1
Assembly Coverage 130


Biosample

Curated Collection Information
Accession 40424038

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea
Original Query Type name
Coordinates (Lat/Lon) 36.56/127.94
Address South Korea

ECOSYSTEM
Original Query Homo sapiens,single cell
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148796.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison
NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148796.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148816.1 See Comparison
CP148888.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison
NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148796.1 See Comparison
CP148862.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
CP148866.1 See Comparison
CP148862.1 See Comparison
NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148796.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison
NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148796.1 See Comparison
CP148866.1 See Comparison
NZ_CP148808.1 See Comparison
NZ_CP148842.1 See Comparison
NZ_CP148812.1 See Comparison
NZ_CP148799.1 See Comparison
NZ_CP148820.1 See Comparison
NZ_CP148792.1 See Comparison
NZ_CP148816.1 See Comparison
NZ_CP148804.1 See Comparison
NZ_CP148834.1 See Comparison
NZ_CP148848.1 See Comparison
NZ_CP148824.1 See Comparison
NZ_CP148830.1 See Comparison
NZ_CP148796.1 See Comparison
CP148862.1 See Comparison
CP148866.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore