Plasmid NZ_CP142856.1

Sequence

Nucleotide Information

Accession	NZ_CP142856.1
Description	Staphylococcus hominis strain Sh8213 plasmid pSh8213-1, complete sequence
Source	refseq
Topology	circular
Length	39524 bp
GC Content	0.29 %
Created at NCBI	Jan. 31, 2024

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Staphylococcus hominis (1290)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Bacillales (1385)
Family	Staphylococcaceae (90964)
Genus	Staphylococcus (1279)
Species	Staphylococcus_hominis (1290)
Strain

Assembly

Genome Data Information

Accession	GCF_036287195.1
Assembly Coverage	77.78

Biosample

Curated Collection Information

Accession	39497361

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	25.05N;102.68E
Original Query Type	coordinates
Coordinates (Lat/Lon)	25.05/102.68
Address	Lingjiaotang Road, 中环金界, Longxiang Subdistrict, Wuhua District, Kunming, Yunnan, 650030, China

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	infection
DOID/SYMP	Disease infectious agent (DOID:0050117 ) A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP098818.1	See Comparison
NZ_CP098822.1	See Comparison
NZ_KJ922127.1	See Comparison
NZ_KP890694.1	See Comparison
NZ_CP048644.1	See Comparison
NZ_CP048644.1	See Comparison
NZ_MT096435.1	See Comparison
NZ_CP077712.1	See Comparison
NZ_KJ922127.1	See Comparison
NZ_KP890694.1	See Comparison
NZ_MT096435.1	See Comparison
NZ_CP077712.1	See Comparison
NZ_CP098818.1	See Comparison
NZ_CP098822.1	See Comparison
NZ_CP142856.1	See Comparison
NZ_KJ922127.1	See Comparison
NZ_CP098659.1	See Comparison
NZ_CP098662.1	See Comparison
NZ_CP098656.1	See Comparison
NZ_CP098652.1	See Comparison
NZ_CP098653.1	See Comparison
NZ_CP098663.1	See Comparison
NZ_CP098661.1	See Comparison
NZ_CP098651.1	See Comparison
NZ_CP098655.1	See Comparison
NZ_CP098648.1	See Comparison
NZ_CP098658.1	See Comparison
NZ_CP098654.1	See Comparison
NZ_CP098647.1	See Comparison
NZ_CP098650.1	See Comparison
NZ_CP098657.1	See Comparison
NZ_CP098646.1	See Comparison
NZ_CP098649.1	See Comparison
NZ_CP098818.1	See Comparison
NZ_CP098822.1	See Comparison
NZ_CP048644.1	See Comparison
NZ_CP098659.1	See Comparison
NZ_CP098662.1	See Comparison
NZ_CP098656.1	See Comparison
NZ_CP098652.1	See Comparison
NZ_CP098653.1	See Comparison
NZ_CP098663.1	See Comparison
NZ_CP098661.1	See Comparison
NZ_CP098651.1	See Comparison
NZ_CP098655.1	See Comparison
NZ_CP098648.1	See Comparison
NZ_CP098658.1	See Comparison
NZ_CP098654.1	See Comparison
NZ_CP098647.1	See Comparison
NZ_CP098650.1	See Comparison
NZ_CP098657.1	See Comparison
NZ_CP098646.1	See Comparison
NZ_CP098649.1	See Comparison
NZ_KP890694.1	See Comparison
NZ_KP890694.1	See Comparison
NZ_MT096435.1	See Comparison
NZ_CP077712.1	See Comparison
NZ_CP098659.1	See Comparison
NZ_CP098662.1	See Comparison
NZ_CP098656.1	See Comparison
NZ_CP098652.1	See Comparison
NZ_CP098653.1	See Comparison
NZ_CP098663.1	See Comparison
NZ_CP098661.1	See Comparison
NZ_CP098651.1	See Comparison
NZ_CP098655.1	See Comparison
NZ_CP098648.1	See Comparison
NZ_CP098658.1	See Comparison
NZ_CP098654.1	See Comparison
NZ_CP098647.1	See Comparison
NZ_CP098650.1	See Comparison
NZ_CP098657.1	See Comparison
NZ_CP098646.1	See Comparison
NZ_CP098649.1	See Comparison
NZ_CP098818.1	See Comparison
NZ_CP098822.1	See Comparison
NZ_CP098659.1	See Comparison
NZ_KJ922127.1	See Comparison
NZ_CP048644.1	See Comparison
NZ_CP098662.1	See Comparison
NZ_CP098656.1	See Comparison
NZ_CP098652.1	See Comparison
NZ_CP098653.1	See Comparison
NZ_CP098663.1	See Comparison
NZ_CP098661.1	See Comparison
NZ_CP098651.1	See Comparison
NZ_CP098655.1	See Comparison
NZ_CP098648.1	See Comparison
NZ_CP098658.1	See Comparison
NZ_CP098654.1	See Comparison
NZ_CP098647.1	See Comparison
NZ_CP098650.1	See Comparison
NZ_CP098657.1	See Comparison
NZ_CP098646.1	See Comparison
NZ_CP098649.1	See Comparison
NZ_MT096435.1	See Comparison
NZ_CP077712.1	See Comparison
NZ_KJ922127.1	See Comparison
NZ_CP098818.1	See Comparison
NZ_CP098822.1	See Comparison
NZ_MT096435.1	See Comparison
NZ_CP048644.1	See Comparison
NZ_KP890694.1	See Comparison
NZ_CP098659.1	See Comparison
NZ_CP098662.1	See Comparison
NZ_CP098656.1	See Comparison
NZ_CP098652.1	See Comparison
NZ_CP098653.1	See Comparison
NZ_CP098663.1	See Comparison
NZ_CP098661.1	See Comparison
NZ_CP098651.1	See Comparison
NZ_CP098655.1	See Comparison
NZ_CP098648.1	See Comparison
NZ_CP098658.1	See Comparison
NZ_CP098654.1	See Comparison
NZ_CP098647.1	See Comparison
NZ_CP098650.1	See Comparison
NZ_CP098657.1	See Comparison
NZ_CP098646.1	See Comparison
NZ_CP098649.1	See Comparison
NZ_CP077712.1	See Comparison
NZ_CP098818.1	See Comparison
NZ_CP098822.1	See Comparison
NZ_KJ922127.1	See Comparison
NZ_KP890694.1	See Comparison
NZ_CP048644.1	See Comparison
NZ_CP098659.1	See Comparison
NZ_CP098662.1	See Comparison
NZ_CP098656.1	See Comparison
NZ_CP098652.1	See Comparison
NZ_CP098653.1	See Comparison
NZ_CP098663.1	See Comparison
NZ_CP098661.1	See Comparison
NZ_CP098651.1	See Comparison
NZ_CP098655.1	See Comparison
NZ_CP098648.1	See Comparison
NZ_CP098658.1	See Comparison
NZ_CP098654.1	See Comparison
NZ_CP098647.1	See Comparison
NZ_CP098650.1	See Comparison
NZ_CP098657.1	See Comparison
NZ_CP098646.1	See Comparison
NZ_CP098649.1	See Comparison
NZ_MT096435.1	See Comparison
NZ_CP077712.1	See Comparison
NZ_CP048644.1	See Comparison
NZ_MT096435.1	See Comparison
NZ_CP077712.1	See Comparison
NZ_CP098818.1	See Comparison
NZ_CP098822.1	See Comparison
NZ_KJ922127.1	See Comparison
NZ_KP890694.1	See Comparison
NZ_CP098659.1	See Comparison
NZ_CP098662.1	See Comparison
NZ_CP098656.1	See Comparison
NZ_CP098652.1	See Comparison
NZ_CP098653.1	See Comparison
NZ_CP098663.1	See Comparison
NZ_CP098661.1	See Comparison
NZ_CP098651.1	See Comparison
NZ_CP098655.1	See Comparison
NZ_CP098648.1	See Comparison
NZ_CP098658.1	See Comparison
NZ_CP098654.1	See Comparison
NZ_CP098647.1	See Comparison
NZ_CP098650.1	See Comparison
NZ_CP098657.1	See Comparison
NZ_CP098646.1	See Comparison
NZ_CP098649.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2