Plasmid NZ_CP098822.1

Sequence

Nucleotide Information

Accession NZ_CP098822.1
Description Staphylococcus capitis strain XWZ plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 39504 bp
GC Content 0.29 %
Created at NCBI May 18, 2024



Biosample

Curated Collection Information
Accession 23101376

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.25N;120.20E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.25/120.20
Address Jiefang Road East, 常青苑社区, 四季青街道, Shangcheng District, Hangzhou City, Zhejiang, 310016, China

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bacterial sepsis
DOID/SYMP
  • Bacterial sepsis (DOID:0040085 )
    • A bacterial infectious disease has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP142856.1 See Comparison
NZ_KJ922127.1 See Comparison
NZ_KP890694.1 See Comparison
NZ_CP048644.1 See Comparison
NZ_CP098818.1 See Comparison
NZ_CP142856.1 See Comparison
NZ_MT096435.1 See Comparison
NZ_CP077712.1 See Comparison
NZ_CP098659.1 See Comparison
NZ_CP098662.1 See Comparison
NZ_CP098656.1 See Comparison
NZ_CP098652.1 See Comparison
NZ_CP098653.1 See Comparison
NZ_CP098663.1 See Comparison
NZ_CP098661.1 See Comparison
NZ_CP098651.1 See Comparison
NZ_CP098655.1 See Comparison
NZ_CP098648.1 See Comparison
NZ_CP098658.1 See Comparison
NZ_CP098654.1 See Comparison
NZ_CP098647.1 See Comparison
NZ_CP098650.1 See Comparison
NZ_CP098657.1 See Comparison
NZ_CP098646.1 See Comparison
NZ_CP098649.1 See Comparison
NZ_MT096435.1 See Comparison
NZ_CP077712.1 See Comparison
NZ_CP098818.1 See Comparison
NZ_CP098822.1 See Comparison
NZ_KJ922127.1 See Comparison
NZ_KP890694.1 See Comparison
NZ_CP048644.1 See Comparison
NZ_CP098659.1 See Comparison
NZ_CP098662.1 See Comparison
NZ_CP098656.1 See Comparison
NZ_CP098652.1 See Comparison
NZ_CP098653.1 See Comparison
NZ_CP098663.1 See Comparison
NZ_CP098661.1 See Comparison
NZ_CP098651.1 See Comparison
NZ_CP098655.1 See Comparison
NZ_CP098648.1 See Comparison
NZ_CP098658.1 See Comparison
NZ_CP098654.1 See Comparison
NZ_CP098647.1 See Comparison
NZ_CP098650.1 See Comparison
NZ_CP098657.1 See Comparison
NZ_CP098646.1 See Comparison
NZ_CP098649.1 See Comparison
NZ_KJ922127.1 See Comparison
NZ_CP142856.1 See Comparison
NZ_KP890694.1 See Comparison
NZ_CP098659.1 See Comparison
NZ_CP048644.1 See Comparison
NZ_CP098662.1 See Comparison
NZ_CP098656.1 See Comparison
NZ_CP098652.1 See Comparison
NZ_CP098653.1 See Comparison
NZ_CP098663.1 See Comparison
NZ_CP098661.1 See Comparison
NZ_CP098651.1 See Comparison
NZ_CP098655.1 See Comparison
NZ_CP098648.1 See Comparison
NZ_CP098658.1 See Comparison
NZ_CP098654.1 See Comparison
NZ_CP098647.1 See Comparison
NZ_CP098650.1 See Comparison
NZ_CP098657.1 See Comparison
NZ_CP098646.1 See Comparison
NZ_CP098649.1 See Comparison
NZ_KJ922127.1 See Comparison
NZ_CP077712.1 See Comparison
NZ_CP142856.1 See Comparison
NZ_MT096435.1 See Comparison
NZ_CP098818.1 See Comparison
NZ_KP890694.1 See Comparison
NZ_MT096435.1 See Comparison
NZ_CP077712.1 See Comparison
NZ_CP048644.1 See Comparison
NZ_CP098659.1 See Comparison
NZ_CP098662.1 See Comparison
NZ_CP098656.1 See Comparison
NZ_CP098652.1 See Comparison
NZ_CP098653.1 See Comparison
NZ_CP098663.1 See Comparison
NZ_CP098661.1 See Comparison
NZ_CP098651.1 See Comparison
NZ_CP098655.1 See Comparison
NZ_CP098648.1 See Comparison
NZ_CP098658.1 See Comparison
NZ_CP098654.1 See Comparison
NZ_CP098647.1 See Comparison
NZ_CP098650.1 See Comparison
NZ_CP098657.1 See Comparison
NZ_CP098646.1 See Comparison
NZ_CP098649.1 See Comparison
NZ_CP098818.1 See Comparison
NZ_KJ922127.1 See Comparison
NZ_CP142856.1 See Comparison
NZ_KP890694.1 See Comparison
NZ_CP048644.1 See Comparison
NZ_MT096435.1 See Comparison
NZ_CP098659.1 See Comparison
NZ_CP098662.1 See Comparison
NZ_CP098656.1 See Comparison
NZ_CP098652.1 See Comparison
NZ_CP098653.1 See Comparison
NZ_CP098663.1 See Comparison
NZ_CP098661.1 See Comparison
NZ_CP098651.1 See Comparison
NZ_CP098655.1 See Comparison
NZ_CP098648.1 See Comparison
NZ_CP098658.1 See Comparison
NZ_CP098654.1 See Comparison
NZ_CP098647.1 See Comparison
NZ_CP098650.1 See Comparison
NZ_CP098657.1 See Comparison
NZ_CP098646.1 See Comparison
NZ_CP098649.1 See Comparison
NZ_CP077712.1 See Comparison
NZ_CP098818.1 See Comparison
NZ_KJ922127.1 See Comparison
NZ_CP142856.1 See Comparison
NZ_KP890694.1 See Comparison
NZ_CP048644.1 See Comparison
NZ_CP098659.1 See Comparison
NZ_CP098662.1 See Comparison
NZ_CP098656.1 See Comparison
NZ_CP098652.1 See Comparison
NZ_CP098653.1 See Comparison
NZ_CP098663.1 See Comparison
NZ_CP098661.1 See Comparison
NZ_CP098651.1 See Comparison
NZ_CP098655.1 See Comparison
NZ_CP098648.1 See Comparison
NZ_CP098658.1 See Comparison
NZ_CP098654.1 See Comparison
NZ_CP098647.1 See Comparison
NZ_CP098650.1 See Comparison
NZ_CP098657.1 See Comparison
NZ_CP098646.1 See Comparison
NZ_CP098649.1 See Comparison
NZ_MT096435.1 See Comparison
NZ_CP077712.1 See Comparison
NZ_CP098818.1 See Comparison
NZ_CP142856.1 See Comparison
NZ_KP890694.1 See Comparison
NZ_MT096435.1 See Comparison
NZ_CP077712.1 See Comparison
NZ_CP098818.1 See Comparison
NZ_KJ922127.1 See Comparison
NZ_CP048644.1 See Comparison
NZ_CP098659.1 See Comparison
NZ_CP098662.1 See Comparison
NZ_CP098656.1 See Comparison
NZ_CP098652.1 See Comparison
NZ_CP098653.1 See Comparison
NZ_CP098663.1 See Comparison
NZ_CP098661.1 See Comparison
NZ_CP098651.1 See Comparison
NZ_CP098655.1 See Comparison
NZ_CP098648.1 See Comparison
NZ_CP098658.1 See Comparison
NZ_CP098654.1 See Comparison
NZ_CP098647.1 See Comparison
NZ_CP098650.1 See Comparison
NZ_CP098657.1 See Comparison
NZ_CP098646.1 See Comparison
NZ_CP098649.1 See Comparison


Identical Plasmids

100% Sequence Identity













Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2