Plasmid NZ_CP140508.1

Sequence

Nucleotide Information

Accession NZ_CP140508.1
Description Escherichia coli strain 2023CK-01341 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 3174 bp
GC Content 0.47 %
Created at NCBI Dec. 14, 2023



Biosample

Curated Collection Information
Accession 38251294

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP085079.1 See Comparison
NZ_CP084905.1 See Comparison
NC_019987.1 See Comparison
NZ_CP031658.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP130709.1 See Comparison
NC_019987.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP116165.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP110993.1 See Comparison
NZ_CP031658.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP116165.1 See Comparison
NC_019987.1 See Comparison
NZ_CP031658.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP110993.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP110993.1 See Comparison
NZ_CP116165.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP116165.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP059008.1 See Comparison
NC_019987.1 See Comparison
NZ_CP031658.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP031658.1 See Comparison
NZ_CP110993.1 See Comparison
NC_019987.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP110993.1 See Comparison
NZ_CP116165.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP031658.1 See Comparison
NC_019987.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP140508.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP110993.1 See Comparison
NZ_CP116165.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore