Plasmid NZ_CP031658.1

Sequence

Nucleotide Information

Accession NZ_CP031658.1
Description Escherichia coli strain UK_Dog_Liverpool plasmid pCARB35_05, complete sequence
Source refseq
Topology circular
Length 3174 bp
GC Content 0.47 %
Created at NCBI Sept. 1, 2018



Assembly

Genome Data Information

Accession GCF_003413625.1
Assembly Coverage 169


Biosample

Curated Collection Information
Accession 9829654

PLASMID INFORMATION
Genotype ST410

GEOGRAPHICAL INFORMATION
Original Query 51.4309N;0.0936W
Original Query Type coordinates
Coordinates (Lat/Lon) 51.43/-0.09
Address 82, St Gothard Road, West Dulwich, West Norwood, London Borough of Lambeth, London, Greater London, England, SE27 9QP, United Kingdom

ECOSYSTEM
Original Query dog,foreleg infected wound
Classification disease,host_associated,wound
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query foot lacerations, dog bite wounds and urinary tract infections
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP085079.1 See Comparison
NZ_CP084905.1 See Comparison
NC_019987.1 See Comparison
NZ_CP031658.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP116165.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP140508.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP048318.1 See Comparison
NC_019987.1 See Comparison
NZ_CP110993.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP140508.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP116165.1 See Comparison
NC_019987.1 See Comparison
NZ_CP110993.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP140508.1 See Comparison
NC_019987.1 See Comparison
NZ_CP110993.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP116165.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP140508.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP116165.1 See Comparison
NZ_CP110993.1 See Comparison
NC_019987.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP116165.1 See Comparison
NZ_CP110993.1 See Comparison
NZ_CP085079.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP029121.1 See Comparison
NZ_CP140508.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP084905.1 See Comparison
NZ_CP130709.1 See Comparison
NZ_CP029121.1 See Comparison
NC_019987.1 See Comparison
NZ_CP048318.1 See Comparison
NZ_CP140508.1 See Comparison
NZ_CP059008.1 See Comparison
NZ_CP116165.1 See Comparison
NZ_CP110993.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore