Plasmid NZ_CP139851.1

Sequence

Nucleotide Information

Accession NZ_CP139851.1
Description Citrobacter freundii strain UKJ86 plasmid pUKJ86_2
Source refseq
Topology linear
Length 3198 bp
GC Content 0.56 %
Created at NCBI Jan. 26, 2024



Assembly

Genome Data Information

Accession GCF_034422555.1
Assembly Coverage 187


Biosample

Curated Collection Information
Accession 38610813

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Germany
Original Query Type name
Coordinates (Lat/Lon) 51.08/10.42
Address Germany

ECOSYSTEM
Original Query Homo sapiens,cell culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP063002.1 See Comparison
CP099711.1 See Comparison
NZ_OX291473.1 See Comparison
NZ_OX291589.1 See Comparison
NZ_OX291531.1 See Comparison
NZ_OX291708.1 See Comparison
NZ_OX291539.1 See Comparison
NZ_OX291749.1 See Comparison
NZ_OX291774.1 See Comparison
NZ_OX291799.1 See Comparison
NZ_CP103725.1 See Comparison
NZ_OW849161.1 See Comparison
NZ_OW849496.1 See Comparison
OW849434.1 See Comparison
CP094902.1 See Comparison
CP091130.1 See Comparison
NZ_CP067317.1 See Comparison
NZ_CP014305.2 See Comparison
NZ_CP042544.1 See Comparison
NZ_CP012991.1 See Comparison
NZ_CP011569.1 See Comparison
NZ_CP042570.1 See Comparison
AP028570.1 See Comparison
NZ_CP011658.1 See Comparison
AP028560.1 See Comparison
AP028554.1 See Comparison
AP028532.1 See Comparison
AP028528.1 See Comparison
AP028489.1 See Comparison
NZ_CP042539.1 See Comparison
NZ_OX461108.1 See Comparison
NZ_CP145170.1 See Comparison
NZ_CP145194.1 See Comparison
NZ_CP145186.1 See Comparison
NZ_CP056227.1 See Comparison
CP099711.1 See Comparison
NZ_CP063002.1 See Comparison
NZ_OW849496.1 See Comparison
NZ_CP103725.1 See Comparison
NZ_OX291473.1 See Comparison
NZ_OX291589.1 See Comparison
NZ_OX291531.1 See Comparison
NZ_OX291708.1 See Comparison
NZ_OX291539.1 See Comparison
NZ_OX291749.1 See Comparison
NZ_OX291774.1 See Comparison
NZ_OX291799.1 See Comparison
NZ_OW849161.1 See Comparison
CP091130.1 See Comparison
OW849434.1 See Comparison
CP094902.1 See Comparison
NZ_CP067317.1 See Comparison
NZ_CP011569.1 See Comparison
NZ_CP014305.2 See Comparison
NZ_CP011658.1 See Comparison
NZ_CP042544.1 See Comparison
NZ_CP042570.1 See Comparison
NZ_CP012991.1 See Comparison
NZ_CP145170.1 See Comparison
NZ_OX461108.1 See Comparison
AP028570.1 See Comparison
AP028560.1 See Comparison
AP028554.1 See Comparison
AP028532.1 See Comparison
AP028528.1 See Comparison
AP028489.1 See Comparison
NZ_CP145194.1 See Comparison
NZ_CP145186.1 See Comparison
NZ_CP056227.1 See Comparison
NZ_CP063002.1 See Comparison
NZ_CP042539.1 See Comparison
NZ_OX291473.1 See Comparison
NZ_CP103725.1 See Comparison
CP099711.1 See Comparison
NZ_OX291589.1 See Comparison
NZ_OX291531.1 See Comparison
NZ_OX291708.1 See Comparison
NZ_OX291539.1 See Comparison
NZ_OX291749.1 See Comparison
NZ_OX291774.1 See Comparison
NZ_OX291799.1 See Comparison
NZ_OW849161.1 See Comparison
CP094902.1 See Comparison
NZ_OW849496.1 See Comparison
OW849434.1 See Comparison
CP091130.1 See Comparison
NZ_CP014305.2 See Comparison
NZ_CP067317.1 See Comparison
NZ_CP042544.1 See Comparison
NZ_CP011569.1 See Comparison
NZ_CP012991.1 See Comparison
NZ_CP042570.1 See Comparison
NZ_OX461108.1 See Comparison
AP028570.1 See Comparison
AP028560.1 See Comparison
AP028554.1 See Comparison
AP028532.1 See Comparison
AP028528.1 See Comparison
AP028489.1 See Comparison
NZ_CP011658.1 See Comparison
CP094902.1 See Comparison
NZ_CP145170.1 See Comparison
NZ_CP145194.1 See Comparison
NZ_CP145186.1 See Comparison
NZ_CP056227.1 See Comparison
NZ_CP063002.1 See Comparison
CP099711.1 See Comparison
NZ_CP103725.1 See Comparison
OW849434.1 See Comparison
NZ_CP042539.1 See Comparison
NZ_OX291473.1 See Comparison
NZ_OX291589.1 See Comparison
NZ_OX291531.1 See Comparison
NZ_OX291708.1 See Comparison
NZ_OX291539.1 See Comparison
NZ_OX291749.1 See Comparison
NZ_OX291774.1 See Comparison
NZ_OX291799.1 See Comparison
NZ_OW849161.1 See Comparison
NZ_OW849496.1 See Comparison
CP091130.1 See Comparison
NZ_CP067317.1 See Comparison
NZ_CP011569.1 See Comparison
NZ_CP014305.2 See Comparison
NZ_CP012991.1 See Comparison
AP028570.1 See Comparison
NZ_CP011658.1 See Comparison
NZ_CP042544.1 See Comparison
NZ_CP042570.1 See Comparison
AP028560.1 See Comparison
AP028554.1 See Comparison
AP028532.1 See Comparison
AP028528.1 See Comparison
AP028489.1 See Comparison
NZ_CP063002.1 See Comparison
NZ_CP145170.1 See Comparison
NZ_CP145194.1 See Comparison
NZ_CP145186.1 See Comparison
NZ_CP056227.1 See Comparison
NZ_CP042539.1 See Comparison
NZ_OX461108.1 See Comparison
NZ_OX291473.1 See Comparison
CP099711.1 See Comparison
NZ_OX291589.1 See Comparison
NZ_CP103725.1 See Comparison
NZ_OX291531.1 See Comparison
NZ_OX291708.1 See Comparison
NZ_OX291539.1 See Comparison
NZ_OX291749.1 See Comparison
NZ_OX291774.1 See Comparison
NZ_OX291799.1 See Comparison
NZ_OW849161.1 See Comparison
CP094902.1 See Comparison
NZ_OW849496.1 See Comparison
OW849434.1 See Comparison
CP091130.1 See Comparison
NZ_CP011569.1 See Comparison
NZ_CP067317.1 See Comparison
NZ_CP014305.2 See Comparison
NZ_CP012991.1 See Comparison
NZ_CP042544.1 See Comparison
NZ_CP042570.1 See Comparison
NZ_CP011658.1 See Comparison
AP028570.1 See Comparison
AP028560.1 See Comparison
AP028554.1 See Comparison
AP028532.1 See Comparison
AP028528.1 See Comparison
AP028489.1 See Comparison
NZ_CP056227.1 See Comparison
NZ_CP139851.1 See Comparison
NZ_OX461108.1 See Comparison
NZ_CP145170.1 See Comparison
NZ_CP145194.1 See Comparison
NZ_CP145186.1 See Comparison
NZ_CP063002.1 See Comparison
NZ_CP042539.1 See Comparison
NZ_CP103725.1 See Comparison
CP099711.1 See Comparison
NZ_OX291473.1 See Comparison
NZ_OX291589.1 See Comparison
NZ_OX291531.1 See Comparison
NZ_OX291708.1 See Comparison
NZ_OX291539.1 See Comparison
NZ_OX291749.1 See Comparison
NZ_OX291774.1 See Comparison
NZ_CP011569.1 See Comparison
NZ_OX291799.1 See Comparison
NZ_OW849161.1 See Comparison
NZ_OW849496.1 See Comparison
CP094902.1 See Comparison
CP091130.1 See Comparison
NZ_CP014305.2 See Comparison
OW849434.1 See Comparison
NZ_CP067317.1 See Comparison
NZ_CP012991.1 See Comparison
NZ_CP042544.1 See Comparison
NZ_OX461108.1 See Comparison
NZ_CP042570.1 See Comparison
AP028532.1 See Comparison
AP028528.1 See Comparison
AP028489.1 See Comparison
NZ_CP011658.1 See Comparison
AP028570.1 See Comparison
AP028560.1 See Comparison
AP028554.1 See Comparison
NZ_CP145170.1 See Comparison
NZ_CP145194.1 See Comparison
NZ_CP145186.1 See Comparison
NZ_CP056227.1 See Comparison
NZ_CP042539.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore