Plasmid NZ_CP139851.1
Sequence
Nucleotide Information
| Accession | NZ_CP139851.1 |
|---|---|
| Description | Citrobacter freundii strain UKJ86 plasmid pUKJ86_2 |
| Source | refseq |
| Topology | linear |
| Length | 3198 bp |
| GC Content | 0.56 % |
| Created at NCBI | Jan. 26, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Citrobacter freundii (546) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Citrobacter (544) |
| Species | Citrobacter_freundii (546) |
| Strain |
Biosample
Curated Collection Information
| Accession | 38610813 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Germany |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 51.08/10.42 |
| Address | Germany |
ECOSYSTEM
| Original Query | Homo sapiens,cell culture |
|---|---|
| Classification | cell_culture,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | qacG | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | EmrE family multidrug efflux SMR transporter | copy | ||
| MOB-typer | ColRNAI_rep_cluster_1987 | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 9 of 9 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP041116_00002 | ColRNAI_rep_cluster_1987 | 2004 | 2488 | plus | 84.756 | 93 | 1.73e-132 | 479 |
| relaxase | NC_013090_00004 | MOBP | 2 | 1423 | minus | 92.616 | 95 | 0 | 863 |
| oriT | CP016722 | MOB_unknown | 1832 | 2025 | minus | 92.821 | 89 | 2.02e-73 | 281 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |