Plasmid NZ_CP139788.1

Sequence

Nucleotide Information

Accession NZ_CP139788.1
Description Klebsiella pneumoniae subsp. pneumoniae strain FF29-002PS2 plasmid Col440I, complete sequence
Source refseq
Topology linear
Length 10677 bp
GC Content 0.42 %
Created at NCBI Dec. 21, 2023



Assembly

Genome Data Information

Accession GCF_034421615.1
Assembly Coverage 12


Biosample

Curated Collection Information
Accession 38454646

PLASMID INFORMATION
Genotype ST437

GEOGRAPHICAL INFORMATION
Original Query 6.8165S;39.2894E
Original Query Type coordinates
Coordinates (Lat/Lon) -6.82/39.29
Address Askari Centre, 3, Azikiwe Road, City Centre, Kisutu, Ilala Municipal, Dar es-Salaam, Coastal Zone, 11107, Tanzania

ECOSYSTEM
Original Query Homo sapiens,Pus
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Klebsiella bloodstream infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP082999.1 See Comparison
NZ_CP079734.1 See Comparison
NZ_CP113184.1 See Comparison
CP128762.1 See Comparison
NZ_LR890398.1 See Comparison
NZ_CP018446.1 See Comparison
NZ_CP135487.1 See Comparison
NZ_CP126061.1 See Comparison
CP052271.1 See Comparison
NZ_CP135487.1 See Comparison
NZ_CP082999.1 See Comparison
NZ_CP079734.1 See Comparison
NZ_CP018446.1 See Comparison
NZ_CP135487.1 See Comparison
CP128762.1 See Comparison
NZ_CP126061.1 See Comparison
NZ_CP113184.1 See Comparison
NZ_CP082999.1 See Comparison
NZ_CP079734.1 See Comparison
NZ_CP018446.1 See Comparison
CP052271.1 See Comparison
NZ_LR890398.1 See Comparison
NZ_CP113184.1 See Comparison
CP052271.1 See Comparison
NZ_LR890398.1 See Comparison
CP128762.1 See Comparison
NZ_CP126061.1 See Comparison
NZ_CP079734.1 See Comparison
NZ_CP082999.1 See Comparison
NZ_CP018446.1 See Comparison
NZ_CP113184.1 See Comparison
NZ_CP135487.1 See Comparison
CP128762.1 See Comparison
NZ_CP126061.1 See Comparison
NZ_LR890398.1 See Comparison
CP052271.1 See Comparison
NZ_CP079734.1 See Comparison
NZ_CP082999.1 See Comparison
NZ_CP018446.1 See Comparison
CP128762.1 See Comparison
NZ_CP135487.1 See Comparison
NZ_CP113184.1 See Comparison
NZ_LR890398.1 See Comparison
NZ_CP126061.1 See Comparison
CP052271.1 See Comparison
CP052271.1 See Comparison
NZ_CP018446.1 See Comparison
NZ_CP135487.1 See Comparison
CP128762.1 See Comparison
NZ_CP139788.1 See Comparison
NZ_CP082999.1 See Comparison
NZ_CP079734.1 See Comparison
NZ_CP126061.1 See Comparison
NZ_LR890398.1 See Comparison
NZ_CP113184.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore