Plasmid NZ_CP139785.1

Sequence

Nucleotide Information

Accession NZ_CP139785.1
Description Klebsiella pneumoniae subsp. pneumoniae strain FF29-002PS2 plasmid IncFIB(K)-IncFII(K), complete sequence
Source refseq
Topology linear
Length 208561 bp
GC Content 0.53 %
Created at NCBI Dec. 21, 2023



Assembly

Genome Data Information

Accession GCF_034421615.1
Assembly Coverage 12


Biosample

Curated Collection Information
Accession 38454646

PLASMID INFORMATION
Genotype ST437

GEOGRAPHICAL INFORMATION
Original Query 6.8165S;39.2894E
Original Query Type coordinates
Coordinates (Lat/Lon) -6.82/39.29
Address Askari Centre, 3, Azikiwe Road, City Centre, Kisutu, Ilala Municipal, Dar es-Salaam, Coastal Zone, 11107, Tanzania

ECOSYSTEM
Original Query Homo sapiens,Pus
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Klebsiella bloodstream infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP139785.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplushsp20copy
amrfinderplusblaTEM-1copy
amrfinderplusblaNDM-5copy
amrfinderplusclpKcopy
amrfinderplusblecopy
rgimphAcopy
rgirmtBcopy
rgiBRP(MBL)copy
rgiMrxcopy
amrfinderpluspcoScopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 226 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseCP035180_00077MOBF6841969171plus97.61980402
relaxaseNC_021231_00058MOBF6918374441plus98.23210003370
mate-pair-formationNC_014312_00116MPF_F4387644178plus97.031004.49e-60204
mate-pair-formationNC_014312_00118MPF_F4475445491plus99.1871004.63e-159494
mate-pair-formationNC_023332_00154MPF_F4549446915plus99.5781000789
mate-pair-formationNC_021654_00004MPF_F4753048096plus1001002.63e-122386
mate-pair-formationNC_021502_00131MPF_T5073353369plus96.24610001758
mate-pair-formationNC_014312_00128MPF_F5376154378plus98.544985.21e-121384
mate-pair-formationNC_022609_00081MPF_F5439855387plus95.7581000666
mate-pair-formationNC_019389_00080MPF_F5540356038plus96.6981003.2499999999999997e-135424
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2