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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP137008.1
Sequence
Nucleotide Information
Accession
NZ_CP137008.1
Description
Citrobacter koseri strain K1219 plasmid pK1219-4, complete sequence
Source
refseq
Topology
circular
Length
2953 bp
GC Content
0.65 %
Created at NCBI
Nov. 1, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Citrobacter koseri (545)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Citrobacter (544)
Species
Citrobacter_koseri (545)
Strain
Assembly
Genome Data Information
Accession
GCF_033153635.1
Assembly Coverage
200
Biosample
Curated Collection Information
Accession
37830357
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
29.86N;121.56E
Original Query Type
coordinates
Coordinates (Lat/Lon)
29.86/121.56
Address
Baihe, Yinzhou District, Ningbo, Zhejiang, 315000, China
ECOSYSTEM
Original Query
Homo sapiens,sputum
Classification
host_associated,respiratory_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Ischemic encephalopathy
DOID/SYMP
Brain ischemia
(
DOID:2316
)
An ischemia that is characterized by insufficient blood flow to the brain to meet metabolic demand.
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP137007.1
NZ_CP137006.1
NZ_CP137004.1
Similar Plasmids
based on Mash distance
NZ_CP100093.1
See Comparison
NZ_CP100119.1
See Comparison
NZ_CP091552.1
See Comparison
NZ_CP077983.1
See Comparison
NZ_CP078001.1
See Comparison
NZ_CP078011.1
See Comparison
NZ_CP077980.1
See Comparison
NZ_CP077976.1
See Comparison
NZ_CP077993.1
See Comparison
NZ_CP047690.1
See Comparison
NZ_CP136833.1
See Comparison
NZ_CP136831.1
See Comparison
NZ_CP096943.1
See Comparison
NZ_CP047687.1
See Comparison
NZ_CP047693.1
See Comparison
NZ_CP047684.1
See Comparison
NZ_CP047681.1
See Comparison
NZ_CP100093.1
See Comparison
NZ_CP065416.1
See Comparison
NZ_CP100119.1
See Comparison
NZ_CP077983.1
See Comparison
NZ_CP091552.1
See Comparison
NZ_CP078001.1
See Comparison
NZ_CP078011.1
See Comparison
NZ_CP077980.1
See Comparison
NZ_CP077976.1
See Comparison
NZ_CP077993.1
See Comparison
NZ_CP136833.1
See Comparison
NZ_CP136831.1
See Comparison
NZ_CP137008.1
See Comparison
NZ_CP096943.1
See Comparison
NZ_CP047690.1
See Comparison
NZ_CP047687.1
See Comparison
NZ_CP047693.1
See Comparison
NZ_CP047684.1
See Comparison
NZ_CP047681.1
See Comparison
NZ_CP100093.1
See Comparison
NZ_CP065416.1
See Comparison
NZ_CP100119.1
See Comparison
NZ_CP096943.1
See Comparison
NZ_CP136833.1
See Comparison
NZ_CP136831.1
See Comparison
NZ_CP091552.1
See Comparison
NZ_CP077983.1
See Comparison
NZ_CP078001.1
See Comparison
NZ_CP078011.1
See Comparison
NZ_CP077980.1
See Comparison
NZ_CP077976.1
See Comparison
NZ_CP077993.1
See Comparison
NZ_CP100093.1
See Comparison
NZ_CP047690.1
See Comparison
NZ_CP047687.1
See Comparison
NZ_CP047693.1
See Comparison
NZ_CP047684.1
See Comparison
NZ_CP047681.1
See Comparison
NZ_CP065416.1
See Comparison
NZ_CP100119.1
See Comparison
NZ_CP077983.1
See Comparison
NZ_CP091552.1
See Comparison
NZ_CP078001.1
See Comparison
NZ_CP078011.1
See Comparison
NZ_CP077980.1
See Comparison
NZ_CP077976.1
See Comparison
NZ_CP077993.1
See Comparison
NZ_CP136833.1
See Comparison
NZ_CP136831.1
See Comparison
NZ_CP047690.1
See Comparison
NZ_CP096943.1
See Comparison
NZ_CP047690.1
See Comparison
NZ_CP047687.1
See Comparison
NZ_CP047693.1
See Comparison
NZ_CP047684.1
See Comparison
NZ_CP047681.1
See Comparison
NZ_CP065416.1
See Comparison
NZ_CP091552.1
See Comparison
NZ_CP077983.1
See Comparison
NZ_CP078001.1
See Comparison
NZ_CP078011.1
See Comparison
NZ_CP077980.1
See Comparison
NZ_CP077976.1
See Comparison
NZ_CP077993.1
See Comparison
NZ_CP096943.1
See Comparison
NZ_CP100093.1
See Comparison
NZ_CP100119.1
See Comparison
NZ_CP136833.1
See Comparison
NZ_CP136831.1
See Comparison
NZ_CP047687.1
See Comparison
NZ_CP047693.1
See Comparison
NZ_CP047684.1
See Comparison
NZ_CP047681.1
See Comparison
NZ_CP065416.1
See Comparison
NZ_CP091552.1
See Comparison
NZ_CP136833.1
See Comparison
NZ_CP096943.1
See Comparison
NZ_CP065416.1
See Comparison
NZ_CP100093.1
See Comparison
NZ_CP100119.1
See Comparison
NZ_CP077983.1
See Comparison
NZ_CP078001.1
See Comparison
NZ_CP078011.1
See Comparison
NZ_CP077980.1
See Comparison
NZ_CP077976.1
See Comparison
NZ_CP077993.1
See Comparison
NZ_CP136831.1
See Comparison
NZ_CP047690.1
See Comparison
NZ_CP047687.1
See Comparison
NZ_CP047693.1
See Comparison
NZ_CP047684.1
See Comparison
NZ_CP047681.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore