Plasmid NZ_CP096943.1

Sequence

Nucleotide Information

Accession NZ_CP096943.1
Description Pseudomonas aeruginosa strain NY5524 plasmid pNY5524-NR1, complete sequence
Source refseq
Topology circular
Length 2953 bp
GC Content 0.65 %
Created at NCBI May 28, 2023



Assembly

Genome Data Information

Accession GCF_030121935.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 28004303

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36N;110E
Original Query Type coordinates
Coordinates (Lat/Lon) 36.00/110.00
Address Wazijie, Yan'an, Shaanxi, China

ECOSYSTEM
Original Query Homo sapiens,phlegm
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query craniocerebral trauma
DOID/SYMP
  • Brain disease (DOID:936 )
    • A central nervous system disease that is located_in the brain.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP137008.1 See Comparison
NZ_CP136833.1 See Comparison
NZ_CP136831.1 See Comparison
NZ_CP047690.1 See Comparison
NZ_CP047693.1 See Comparison
NZ_CP047684.1 See Comparison
NZ_CP047681.1 See Comparison
NZ_CP065416.1 See Comparison
NZ_CP100119.1 See Comparison
NZ_CP100119.1 See Comparison
NZ_CP077983.1 See Comparison
NZ_CP078011.1 See Comparison
NZ_CP077980.1 See Comparison
NZ_CP077976.1 See Comparison
NZ_CP077993.1 See Comparison
NZ_CP137008.1 See Comparison
NZ_CP047690.1 See Comparison
NZ_CP047693.1 See Comparison
NZ_CP047684.1 See Comparison
NZ_CP047681.1 See Comparison
NZ_CP065416.1 See Comparison
NZ_CP091552.1 See Comparison
NZ_CP136833.1 See Comparison
NZ_CP136831.1 See Comparison
NZ_CP091552.1 See Comparison
NZ_CP136833.1 See Comparison
NZ_CP137008.1 See Comparison
NZ_CP077983.1 See Comparison
NZ_CP078011.1 See Comparison
NZ_CP077980.1 See Comparison
NZ_CP077976.1 See Comparison
NZ_CP077993.1 See Comparison
NZ_CP136831.1 See Comparison
NZ_CP091552.1 See Comparison
NZ_CP047690.1 See Comparison
NZ_CP047693.1 See Comparison
NZ_CP047684.1 See Comparison
NZ_CP047681.1 See Comparison
NZ_CP065416.1 See Comparison
NZ_CP100119.1 See Comparison
NZ_CP136833.1 See Comparison
NZ_CP077983.1 See Comparison
NZ_CP078011.1 See Comparison
NZ_CP077980.1 See Comparison
NZ_CP077976.1 See Comparison
NZ_CP077993.1 See Comparison
NZ_CP137008.1 See Comparison
NZ_CP136831.1 See Comparison
NZ_CP137008.1 See Comparison
NZ_CP047690.1 See Comparison
NZ_CP047693.1 See Comparison
NZ_CP047684.1 See Comparison
NZ_CP047681.1 See Comparison
NZ_CP065416.1 See Comparison
NZ_CP091552.1 See Comparison
NZ_CP100119.1 See Comparison
NZ_CP077983.1 See Comparison
NZ_CP078011.1 See Comparison
NZ_CP077980.1 See Comparison
NZ_CP077976.1 See Comparison
NZ_CP077993.1 See Comparison
NZ_CP137008.1 See Comparison
NZ_CP096943.1 See Comparison
NZ_CP065416.1 See Comparison
NZ_CP100119.1 See Comparison
NZ_CP136833.1 See Comparison
NZ_CP136831.1 See Comparison
NZ_CP047690.1 See Comparison
NZ_CP047693.1 See Comparison
NZ_CP047684.1 See Comparison
NZ_CP047681.1 See Comparison
NZ_CP091552.1 See Comparison
NZ_CP077983.1 See Comparison
NZ_CP078011.1 See Comparison
NZ_CP077980.1 See Comparison
NZ_CP077976.1 See Comparison
NZ_CP077993.1 See Comparison
NZ_CP136833.1 See Comparison
NZ_CP136831.1 See Comparison
NZ_CP077983.1 See Comparison
NZ_CP047690.1 See Comparison
NZ_CP047693.1 See Comparison
NZ_CP047684.1 See Comparison
NZ_CP047681.1 See Comparison
NZ_CP091552.1 See Comparison
NZ_CP065416.1 See Comparison
NZ_CP100119.1 See Comparison
NZ_CP078011.1 See Comparison
NZ_CP077980.1 See Comparison
NZ_CP077976.1 See Comparison
NZ_CP077993.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore