Plasmid NZ_CP135453.1

Sequence

Nucleotide Information

Accession NZ_CP135453.1
Description Citrobacter freundii strain isolateL plasmid pIsolateL_C, complete sequence
Source refseq
Topology circular
Length 4783 bp
GC Content 0.53 %
Created at NCBI Oct. 7, 2023



Assembly

Genome Data Information

Accession GCF_032347795.1
Assembly Coverage 138


Biosample

Curated Collection Information
Accession 37529183

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Canada,Ottawa
Original Query Type name
Coordinates (Lat/Lon) 45.42/-75.69
Address Canada,Ottawa

ECOSYSTEM
Original Query Homo sapiens,bacterial culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP084218.1 See Comparison
NZ_CP083615.1 See Comparison
NZ_CP135453.1 See Comparison
NZ_CP126791.1 See Comparison
NZ_CP048653.1 See Comparison
NZ_CP058200.1 See Comparison
NZ_CP065694.1 See Comparison
CP056562.1 See Comparison
CP056444.1 See Comparison
NZ_CP056725.1 See Comparison
NZ_CP056755.1 See Comparison
NZ_CP056746.1 See Comparison
NZ_CP056758.1 See Comparison
NZ_CP056749.1 See Comparison
NZ_CP102926.1 See Comparison
NZ_OV754002.1 See Comparison
NZ_OV753638.1 See Comparison
OW849363.1 See Comparison
NZ_OW849159.1 See Comparison
OW968362.1 See Comparison
OW968472.1 See Comparison
OW968030.1 See Comparison
OW849097.1 See Comparison
NZ_CP092045.1 See Comparison
NZ_CP095168.1 See Comparison
OW849176.1 See Comparison
OW849165.1 See Comparison
OW849145.1 See Comparison
NZ_CP058200.1 See Comparison
NZ_CP126791.1 See Comparison
NZ_CP084218.1 See Comparison
NZ_CP083615.1 See Comparison
NZ_CP065694.1 See Comparison
CP056562.1 See Comparison
CP056444.1 See Comparison
NZ_CP048653.1 See Comparison
NZ_OV753638.1 See Comparison
NZ_CP056725.1 See Comparison
NZ_CP056755.1 See Comparison
NZ_CP056746.1 See Comparison
NZ_CP056758.1 See Comparison
NZ_CP056749.1 See Comparison
NZ_OW849159.1 See Comparison
NZ_OV754002.1 See Comparison
NZ_CP102926.1 See Comparison
OW968362.1 See Comparison
OW968472.1 See Comparison
OW849363.1 See Comparison
OW968030.1 See Comparison
OW849176.1 See Comparison
OW849165.1 See Comparison
OW849145.1 See Comparison
OW849097.1 See Comparison
NZ_CP083615.1 See Comparison
NZ_CP095168.1 See Comparison
NZ_CP092045.1 See Comparison
NZ_CP126791.1 See Comparison
NZ_CP084218.1 See Comparison
NZ_CP058200.1 See Comparison
NZ_OV754002.1 See Comparison
CP056562.1 See Comparison
CP056444.1 See Comparison
NZ_CP065694.1 See Comparison
NZ_CP048653.1 See Comparison
NZ_CP056725.1 See Comparison
NZ_CP056755.1 See Comparison
NZ_CP056746.1 See Comparison
NZ_CP056758.1 See Comparison
NZ_CP056749.1 See Comparison
NZ_OV753638.1 See Comparison
OW968472.1 See Comparison
NZ_CP102926.1 See Comparison
NZ_OW849159.1 See Comparison
OW968030.1 See Comparison
OW968362.1 See Comparison
OW849176.1 See Comparison
OW849363.1 See Comparison
OW849165.1 See Comparison
OW849145.1 See Comparison
OW849097.1 See Comparison
NZ_CP095168.1 See Comparison
NZ_CP083615.1 See Comparison
NZ_CP092045.1 See Comparison
OW968472.1 See Comparison
NZ_CP084218.1 See Comparison
NZ_CP126791.1 See Comparison
NZ_CP058200.1 See Comparison
NZ_CP065694.1 See Comparison
NZ_CP048653.1 See Comparison
NZ_CP056725.1 See Comparison
NZ_CP056755.1 See Comparison
NZ_CP056746.1 See Comparison
NZ_CP056758.1 See Comparison
NZ_CP056749.1 See Comparison
NZ_OV754002.1 See Comparison
NZ_OV753638.1 See Comparison
NZ_OW849159.1 See Comparison
CP056562.1 See Comparison
CP056444.1 See Comparison
NZ_CP102926.1 See Comparison
OW849363.1 See Comparison
OW968362.1 See Comparison
OW968030.1 See Comparison
OW849165.1 See Comparison
OW849145.1 See Comparison
OW849097.1 See Comparison
NZ_CP092045.1 See Comparison
OW849176.1 See Comparison
NZ_CP095168.1 See Comparison
NZ_CP084218.1 See Comparison
NZ_CP083615.1 See Comparison
NZ_CP065694.1 See Comparison
NZ_CP126791.1 See Comparison
CP056562.1 See Comparison
CP056444.1 See Comparison
NZ_CP058200.1 See Comparison
OW968362.1 See Comparison
NZ_CP048653.1 See Comparison
NZ_CP056725.1 See Comparison
NZ_CP056755.1 See Comparison
NZ_CP056746.1 See Comparison
NZ_CP056758.1 See Comparison
NZ_CP056749.1 See Comparison
NZ_OW849159.1 See Comparison
NZ_OV754002.1 See Comparison
NZ_OV753638.1 See Comparison
NZ_CP102926.1 See Comparison
OW968472.1 See Comparison
OW849363.1 See Comparison
OW968030.1 See Comparison
OW849165.1 See Comparison
OW849145.1 See Comparison
OW849097.1 See Comparison
OW849176.1 See Comparison
NZ_CP095168.1 See Comparison
NZ_CP092045.1 See Comparison
NZ_CP084218.1 See Comparison
NZ_CP083615.1 See Comparison
NZ_CP058200.1 See Comparison
NZ_CP126791.1 See Comparison
NZ_OV754002.1 See Comparison
NZ_CP065694.1 See Comparison
CP056562.1 See Comparison
CP056444.1 See Comparison
NZ_CP048653.1 See Comparison
NZ_CP056725.1 See Comparison
NZ_CP056755.1 See Comparison
NZ_CP056746.1 See Comparison
NZ_CP056758.1 See Comparison
NZ_CP056749.1 See Comparison
NZ_OV753638.1 See Comparison
NZ_OW849159.1 See Comparison
NZ_CP102926.1 See Comparison
OW968472.1 See Comparison
OW968030.1 See Comparison
OW968362.1 See Comparison
OW849363.1 See Comparison
OW849145.1 See Comparison
OW849176.1 See Comparison
OW849165.1 See Comparison
NZ_CP095168.1 See Comparison
OW849097.1 See Comparison
NZ_CP092045.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore