Plasmid NZ_CP134088.1

Sequence

Nucleotide Information

Accession NZ_CP134088.1
Description Escherichia coli strain Ec45-2020 plasmid pEc45-2020-254kb, complete sequence
Source refseq
Topology circular
Length 254224 bp
GC Content 0.48 %
Created at NCBI May 1, 2024



Biosample

Curated Collection Information
Accession 37265790

PLASMID INFORMATION
Genotype ST162
BIOSAMPLE_pathotype APEC

GEOGRAPHICAL INFORMATION
Original Query 46.957566N;20.040174E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.96/20.04
Address V. dűlő, Tiszakécske, Tiszakécskei járás, Bács-Kiskun, South Great Plain, Great Plain and North, 6060, Hungary

ECOSYSTEM
Original Query duck caecum
Classification cecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
CP060845.1 See Comparison
NZ_CP068510.1 See Comparison
NZ_CP134088.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP060586.1 See Comparison
NZ_CP065568.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060841.1 See Comparison
NZ_CP068510.1 See Comparison
CP060845.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
CP060845.1 See Comparison
NZ_CP060586.1 See Comparison
NZ_CP065568.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
NZ_CP149336.1 See Comparison
CP060845.1 See Comparison
NZ_CP068510.1 See Comparison
NZ_CP060586.1 See Comparison
NZ_CP065568.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
NZ_CP149336.1 See Comparison
CP060845.1 See Comparison
NZ_CP060586.1 See Comparison
NZ_CP065568.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
NZ_CP068510.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP068510.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP060586.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
NZ_CP065568.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
CP060845.1 See Comparison
NZ_CP060586.1 See Comparison
NZ_CP065568.1 See Comparison
NZ_CP068510.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore