Plasmid NZ_CP068510.1

Sequence

Nucleotide Information

Accession NZ_CP068510.1
Description Salmonella enterica subsp. enterica serovar Derby strain 19CS0402 plasmid pIncH1, complete sequence
Source refseq
Topology linear
Length 244075 bp
GC Content 0.47 %
Created at NCBI Jan. 30, 2021



Biosample

Curated Collection Information
Accession 15676760

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 20.8526N;106.0170E
Original Query Type coordinates
Coordinates (Lat/Lon) 20.85/106.02
Address Khoái Châu District, Hưng Yên Province, Vietnam

ECOSYSTEM
Original Query Pork at market
Classification food,meat
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
CP060845.1 See Comparison
NZ_CP134088.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP134088.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
CP060845.1 See Comparison
CP060845.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP068510.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
NZ_CP134088.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
CP060845.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP134088.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
CP060845.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP134088.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison
CP060845.1 See Comparison
NZ_CP134088.1 See Comparison
NZ_CP091616.1 See Comparison
NZ_CP091631.1 See Comparison
NZ_CP091627.1 See Comparison
NZ_CP091605.1 See Comparison
CP060845.1 See Comparison
NZ_CP134088.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP149336.1 See Comparison
NZ_CP060847.1 See Comparison
NZ_CP060835.1 See Comparison
NZ_CP060850.1 See Comparison
NZ_CP060853.1 See Comparison
NZ_CP060838.1 See Comparison
NZ_CP060841.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2