Plasmid NZ_CP129776.1

Sequence

Nucleotide Information

Accession NZ_CP129776.1
Description Klebsiella pneumoniae strain 2020C07-116 plasmid p2020C07-116-148k, complete sequence
Source refseq
Topology circular
Length 148642 bp
GC Content 0.51 %
Created at NCBI July 19, 2023



Assembly

Genome Data Information

Accession GCF_030490085.1
Assembly Coverage 26


Biosample

Curated Collection Information
Accession 36281326

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Taiwan
Original Query Type name
Coordinates (Lat/Lon) 23.60/120.84
Address Taiwan

ECOSYSTEM
Original Query Homo sapiens,whole organism
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040035.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129776.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040035.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040035.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040035.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040035.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040035.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040035.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP065449.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgisul1copy
amrfinderpluspcoBcopy
amrfinderpluspcoDcopy
amrfinderpluspcoScopy
amrfinderpluspcoRcopy
amrfinderplusqnrB4copy
amrfinderpluspcoAcopy
amrfinderpluspcoCcopy
amrfinderplussilAcopy
amrfinderplussilFcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 179 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_014312_00116MPF_F2445824760plus97.031004.49e-60204
mate-pair-formationNC_014312_00118MPF_F2533626073plus99.1871004.63e-159494
mate-pair-formationNC_023332_00154MPF_F2607627497plus99.5781000789
mate-pair-formationNC_021654_00004MPF_F2811228678plus1001002.62e-122386
mate-pair-formationNC_021502_00131MPF_T3131533951plus96.24610001758
mate-pair-formationNC_014312_00128MPF_F3434334960plus98.544985.2e-121384
mate-pair-formationNC_022609_00081MPF_F3498035969plus95.7581000666
mate-pair-formationNC_019389_00080MPF_F3598536620plus96.6981003.2499999999999997e-135424
mate-pair-formationNC_021654_00016MPF_F3662038623plus10010001292
mate-pair-formationNC_019165_00034MPF_F4142342790plus99.7811000842
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2