Plasmid NZ_CP040035.1

Sequence

Nucleotide Information

Accession NZ_CP040035.1
Description Klebsiella pneumoniae strain KPC160117 plasmid pQnr-L117, complete sequence
Source refseq
Topology circular
Length 148625 bp
GC Content 0.51 %
Created at NCBI March 15, 2020



Assembly

Genome Data Information

Accession GCF_011106775.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 11246288

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.3N;120.9E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.30/120.90
Address Zhongzhiguan, Taoyuan District, Kaohsiung, 848, Taiwan

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query urinary tract infections
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP065449.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129776.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040035.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129776.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129776.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP129776.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129776.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129776.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040030.1 See Comparison
NZ_CP065449.1 See Comparison
NZ_CP129728.1 See Comparison
NZ_CP134038.1 See Comparison
NZ_CP134001.1 See Comparison
NZ_CP129788.1 See Comparison
NZ_CP129780.1 See Comparison
NZ_CP129723.1 See Comparison
NZ_CP129720.1 See Comparison
NZ_CP129737.1 See Comparison
NZ_CP129776.1 See Comparison
NZ_CP040025.1 See Comparison
NZ_CP131703.1 See Comparison
NZ_CP131682.1 See Comparison
NZ_CP040030.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP040030.1
    • Description: Klebsiella pneumoniae strain KPC160121 plasmid pQnr-L121, complete sequence
    • Source: refseq
    • Created at NCBI: March 15, 2020

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 11246289
  • GEOGRAPHICAL INFORMATION
    • Original Query: 23.3N;120.9E
    • Original Query Type: coordinates
    • Address: Zhongzhiguan, Taoyuan District, Kaohsiung, 848, Taiwan
    • Coordinates (Lat/Lon): 23.30/120.90
  • ECOSYSTEM
    • Original Query: Homo sapiens,pus
    • Classification: host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: pneumonia
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2