Plasmid NZ_CP129285.1

Sequence

Nucleotide Information

Accession	NZ_CP129285.1
Description	Escherichia coli strain GZM7 plasmid pGZM7f, complete sequence
Source	refseq
Topology	circular
Length	62194 bp
GC Content	0.42 %
Created at NCBI	July 17, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_030439225.1
Assembly Coverage	384

Biosample

Curated Collection Information

Accession	36084424

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China,Henan
Original Query Type	name
Coordinates (Lat/Lon)	34.00/114.00
Address	China,Henan

ECOSYSTEM

Original Query	Chicken,bacterium,liver
Classification	host_associated,liver
Host-associated Taxon	Gallus gallus (9031)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_LN623683.1	See Comparison
NZ_LC477293.1	See Comparison
NZ_KP198615.1	See Comparison
NZ_KM207012.1	See Comparison
NZ_KP091735.1	See Comparison
NZ_KJ020576.1	See Comparison
NZ_KX827311.1	See Comparison
NZ_KY174331.1	See Comparison
NZ_KJ460501.1	See Comparison
NZ_CP052878.1	See Comparison
NZ_CP049103.1	See Comparison
NZ_CP019393.1	See Comparison
NZ_LR890295.1	See Comparison
NZ_CP089770.1	See Comparison
NZ_CP073005.1	See Comparison
NZ_CP098205.1	See Comparison
NZ_OQ230389.1	See Comparison
NC_020270.1	See Comparison
NZ_CP049103.1	See Comparison
NZ_LN623683.1	See Comparison
NZ_LC477293.1	See Comparison
NZ_KP091735.1	See Comparison
NZ_KJ020576.1	See Comparison
NZ_KX827311.1	See Comparison
NZ_KY174331.1	See Comparison
NZ_KJ460501.1	See Comparison
NZ_CP052878.1	See Comparison
NZ_KP198615.1	See Comparison
NZ_KM207012.1	See Comparison
NZ_CP089770.1	See Comparison
NZ_CP019393.1	See Comparison
NZ_LR890295.1	See Comparison
NZ_LR890295.1	See Comparison
NZ_CP098205.1	See Comparison
NC_020270.1	See Comparison
NZ_OQ230389.1	See Comparison
NZ_LN623683.1	See Comparison
NZ_LC477293.1	See Comparison
NZ_KP198615.1	See Comparison
NZ_KM207012.1	See Comparison
NZ_KP091735.1	See Comparison
NZ_CP049103.1	See Comparison
NZ_CP073005.1	See Comparison
NZ_CP129285.1	See Comparison
NZ_KJ020576.1	See Comparison
NZ_KX827311.1	See Comparison
NZ_KY174331.1	See Comparison
NZ_KJ460501.1	See Comparison
NZ_CP052878.1	See Comparison
NZ_CP019393.1	See Comparison
NC_020270.1	See Comparison
NZ_CP089770.1	See Comparison
NZ_CP098205.1	See Comparison
NZ_CP073005.1	See Comparison
NZ_LN623683.1	See Comparison
NZ_OQ230389.1	See Comparison
NZ_LC477293.1	See Comparison
NZ_KJ020576.1	See Comparison
NZ_KP198615.1	See Comparison
NZ_KM207012.1	See Comparison
NZ_KP091735.1	See Comparison
NZ_KX827311.1	See Comparison
NZ_KY174331.1	See Comparison
NZ_KJ460501.1	See Comparison
NZ_CP052878.1	See Comparison
NZ_CP089770.1	See Comparison
NZ_CP019393.1	See Comparison
NZ_LR890295.1	See Comparison
NZ_CP049103.1	See Comparison
NZ_CP073005.1	See Comparison
NZ_CP098205.1	See Comparison
NC_020270.1	See Comparison
NZ_LC477293.1	See Comparison
NZ_OQ230389.1	See Comparison
NZ_LN623683.1	See Comparison
NZ_KP198615.1	See Comparison
NZ_KM207012.1	See Comparison
NZ_KP091735.1	See Comparison
NZ_CP019393.1	See Comparison
NZ_KJ020576.1	See Comparison
NZ_KX827311.1	See Comparison
NZ_KY174331.1	See Comparison
NZ_KJ460501.1	See Comparison
NZ_CP052878.1	See Comparison
NZ_CP049103.1	See Comparison
NZ_LR890295.1	See Comparison
NZ_CP098205.1	See Comparison
NZ_CP089770.1	See Comparison
NZ_LC477293.1	See Comparison
NC_020270.1	See Comparison
NZ_OQ230389.1	See Comparison
NZ_CP073005.1	See Comparison
NZ_KJ020576.1	See Comparison
NZ_LN623683.1	See Comparison
NZ_KP198615.1	See Comparison
NZ_KM207012.1	See Comparison
NZ_KX827311.1	See Comparison
NZ_KP091735.1	See Comparison
NZ_KY174331.1	See Comparison
NZ_KJ460501.1	See Comparison
NZ_CP052878.1	See Comparison
NZ_LR890295.1	See Comparison
NZ_CP019393.1	See Comparison
NZ_CP049103.1	See Comparison
NZ_CP098205.1	See Comparison
NZ_CP089770.1	See Comparison
NC_020270.1	See Comparison
NZ_CP073005.1	See Comparison
NZ_OQ230389.1	See Comparison
NZ_KP198615.1	See Comparison
NZ_LN623683.1	See Comparison
NZ_KM207012.1	See Comparison
NZ_KP091735.1	See Comparison
NZ_LC477293.1	See Comparison
NZ_KJ020576.1	See Comparison
NZ_CP049103.1	See Comparison
NZ_KY174331.1	See Comparison
NZ_KJ460501.1	See Comparison
NZ_CP052878.1	See Comparison
NZ_KX827311.1	See Comparison
NZ_LR890295.1	See Comparison
NZ_CP019393.1	See Comparison
NC_020270.1	See Comparison
NZ_CP089770.1	See Comparison
NZ_CP073005.1	See Comparison
NZ_CP098205.1	See Comparison
NZ_OQ230389.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2