Plasmid NZ_CP098205.1

Sequence

Nucleotide Information

Accession NZ_CP098205.1
Description Escherichia coli strain Z0117EC0055 plasmid pZ0117ECO055-2, complete sequence
Source refseq
Topology circular
Length 62190 bp
GC Content 0.42 %
Created at NCBI June 9, 2022



Assembly

Genome Data Information

Accession GCF_023658285.1
Assembly Coverage 127


Biosample

Curated Collection Information
Accession 28703749

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea
Original Query Type name
Coordinates (Lat/Lon) 36.56/127.94
Address South Korea

ECOSYSTEM
Original Query Canis lupus familiaris,Rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OQ230389.1 See Comparison
NZ_CP129285.1 See Comparison
NZ_LN623683.1 See Comparison
NZ_LC477293.1 See Comparison
NZ_KP198615.1 See Comparison
NZ_KM207012.1 See Comparison
NZ_KP091735.1 See Comparison
NZ_KJ020576.1 See Comparison
NZ_KX827311.1 See Comparison
NZ_KY174331.1 See Comparison
NZ_KJ460501.1 See Comparison
NZ_CP052878.1 See Comparison
NZ_CP049103.1 See Comparison
NZ_CP019393.1 See Comparison
NZ_LR890295.1 See Comparison
NZ_CP089770.1 See Comparison
NZ_OQ230389.1 See Comparison
NZ_CP073005.1 See Comparison
NC_020270.1 See Comparison
NZ_LC477293.1 See Comparison
NZ_CP129285.1 See Comparison
NZ_KJ020576.1 See Comparison
NZ_LN623683.1 See Comparison
NZ_KP198615.1 See Comparison
NZ_KM207012.1 See Comparison
NZ_CP019393.1 See Comparison
NZ_KP091735.1 See Comparison
NZ_KX827311.1 See Comparison
NZ_KY174331.1 See Comparison
NZ_KJ460501.1 See Comparison
NZ_CP052878.1 See Comparison
NZ_CP049103.1 See Comparison
NZ_LR890295.1 See Comparison
NZ_CP089770.1 See Comparison
NZ_CP073005.1 See Comparison
NC_020270.1 See Comparison
NZ_CP129285.1 See Comparison
NZ_OQ230389.1 See Comparison
NZ_KP198615.1 See Comparison
NZ_LN623683.1 See Comparison
NZ_LC477293.1 See Comparison
NZ_KM207012.1 See Comparison
NZ_CP049103.1 See Comparison
NZ_KP091735.1 See Comparison
NZ_KJ020576.1 See Comparison
NZ_KX827311.1 See Comparison
NZ_KY174331.1 See Comparison
NZ_KJ460501.1 See Comparison
NZ_CP052878.1 See Comparison
NZ_CP089770.1 See Comparison
NZ_LR890295.1 See Comparison
NZ_CP019393.1 See Comparison
NZ_KP198615.1 See Comparison
NZ_CP098205.1 See Comparison
NZ_CP073005.1 See Comparison
NC_020270.1 See Comparison
NZ_OQ230389.1 See Comparison
NZ_CP129285.1 See Comparison
NZ_LN623683.1 See Comparison
NZ_LC477293.1 See Comparison
NZ_KP091735.1 See Comparison
NZ_KM207012.1 See Comparison
NZ_KX827311.1 See Comparison
NZ_KJ020576.1 See Comparison
NZ_KY174331.1 See Comparison
NZ_KJ460501.1 See Comparison
NZ_CP052878.1 See Comparison
NZ_CP019393.1 See Comparison
NZ_CP049103.1 See Comparison
NZ_LR890295.1 See Comparison
NZ_CP073005.1 See Comparison
NZ_CP089770.1 See Comparison
NC_020270.1 See Comparison
NZ_LN623683.1 See Comparison
NZ_OQ230389.1 See Comparison
NZ_CP129285.1 See Comparison
NZ_LC477293.1 See Comparison
NZ_KP091735.1 See Comparison
NZ_KJ020576.1 See Comparison
NZ_KP198615.1 See Comparison
NZ_KM207012.1 See Comparison
NZ_KX827311.1 See Comparison
NZ_KY174331.1 See Comparison
NZ_KJ460501.1 See Comparison
NZ_CP052878.1 See Comparison
NZ_CP019393.1 See Comparison
NZ_CP049103.1 See Comparison
NZ_LN623683.1 See Comparison
NZ_LR890295.1 See Comparison
NZ_CP089770.1 See Comparison
NZ_OQ230389.1 See Comparison
NZ_CP073005.1 See Comparison
NC_020270.1 See Comparison
NZ_CP129285.1 See Comparison
NZ_LC477293.1 See Comparison
NZ_KJ020576.1 See Comparison
NZ_KP198615.1 See Comparison
NZ_KM207012.1 See Comparison
NZ_KP091735.1 See Comparison
NZ_KX827311.1 See Comparison
NZ_KY174331.1 See Comparison
NZ_KJ460501.1 See Comparison
NZ_CP052878.1 See Comparison
NZ_CP019393.1 See Comparison
NZ_CP049103.1 See Comparison
NZ_CP073005.1 See Comparison
NZ_CP089770.1 See Comparison
NZ_LR890295.1 See Comparison
NC_020270.1 See Comparison
NZ_OQ230389.1 See Comparison
NZ_LN623683.1 See Comparison
NZ_CP129285.1 See Comparison
NZ_LC477293.1 See Comparison
NZ_KJ020576.1 See Comparison
NZ_KP198615.1 See Comparison
NZ_KM207012.1 See Comparison
NZ_KP091735.1 See Comparison
NZ_KX827311.1 See Comparison
NZ_KY174331.1 See Comparison
NZ_KJ460501.1 See Comparison
NZ_CP052878.1 See Comparison
NZ_CP019393.1 See Comparison
NZ_LR890295.1 See Comparison
NZ_CP073005.1 See Comparison
NZ_CP049103.1 See Comparison
NZ_CP089770.1 See Comparison
NC_020270.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-15copy
PGAGhypothetical proteincopy
PGAGsite-specific integrasecopy
PGAGhypothetical proteincopy
PGAGshufflon system plasmid conjugative transfer pilus tip adhesin PilVcopy
PGAGA24 family peptidasecopy
PGAGlytic transglycosylase domain-containing proteincopy
PGAGtype 4 pilus major pilincopy
PGAGtype II secretion system F family proteincopy
PGAGATPase, T2SS/T4P/T4SS familycopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 85 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_020270_00058MPF_T1223914194minus10010001234
mate-pair-formationNC_019039_00051MPF_T1641617183minus99.2191006.189999999999999e-172532
mate-pair-formationNC_019039_00052MPF_T1718317914minus99.591004.55e-147460
mate-pair-formationNC_020270_00063MPF_T1808120435minus10010001569
mate-pair-formationNC_019115_00018MPF_T2694427927minus98.781000581
repliconKJ460501IncI23305534071plus10010001879
relaxaseNC_022520_00030MOBP5116755369plus98.01810002772
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2