Plasmid NZ_CP128943.1
Sequence
Nucleotide Information
| Accession | NZ_CP128943.1 |
|---|---|
| Description | Escherichia coli strain TUM9754 plasmid pMTY9754_IncN, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 48260 bp |
| GC Content | 0.52 % |
| Created at NCBI | July 7, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 35769031 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Japan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 36.57/139.24 |
| Address | Japan |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | tet(A) | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | blaCTX-M-2 | copy | ||
| amrfinderplus | aadA2 | copy | ||
| rgi | aadA2 | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | recombinase family protein | copy | ||
| PGAG | intI1 | copy | ||
| PGAG | quaternary ammonium compound efflux SMR transporter QacE delta 1 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 68 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_015599_00019 | MOBF | 28412 | 31588 | minus | 100 | 98 | 0 | 2035 |
| mate-pair-formation | NC_009131_00030 | MPF_T | 14646 | 14960 | plus | 100 | 100 | 6.62e-63 | 212 |
| mate-pair-formation | NC_011617_00041 | MPF_T | 14963 | 17560 | plus | 100 | 100 | 0 | 1811 |
| mate-pair-formation | NC_014368_00014 | MPF_T | 18545 | 19582 | plus | 99.422 | 100 | 3.37e-180 | 560 |
| mate-pair-formation | NC_007682_00044 | MPF_T | 19804 | 20499 | plus | 100 | 100 | 9.99e-155 | 481 |
| mate-pair-formation | NC_008612_00190 | MPF_T | 20513 | 21394 | plus | 100 | 100 | 1.2e-176 | 547 |
| mate-pair-formation | NC_022375_00024 | MPF_T | 31591 | 33117 | minus | 99.411 | 100 | 0 | 993 |
| oriT | NZ_CP016498 | MOBF | 33597 | 33864 | minus | 100 | 100 | 8.36e-138 | 496 |
| replicon | 000153__NC_019087_00001 | IncN | 1 | 720 | plus | 99.722 | 100 | 0 | 1319 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 9 of 9 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |