Plasmid AP026450.1

Sequence

Nucleotide Information

Accession AP026450.1
Description Escherichia coli TUM1881 plasmid pMTY1881_IncN DNA, complete sequence
Source insd
Topology circular
Length 49245 bp
GC Content 0.52 %
Created at NCBI July 23, 2022



Assembly

Genome Data Information

Accession GCF_025996795.1
Assembly Coverage 270


Biosample

Curated Collection Information
Accession 29881976

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query whole organism
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP026527.1 See Comparison
AP026516.1 See Comparison
AP026509.1 See Comparison
AP026506.1 See Comparison
AP026499.1 See Comparison
AP026491.1 See Comparison
AP026481.1 See Comparison
AP026478.1 See Comparison
AP026474.1 See Comparison
AP026458.1 See Comparison
NZ_CP128929.1 See Comparison
NZ_CP128929.1 See Comparison
NZ_CP128982.1 See Comparison
NZ_CP128974.1 See Comparison
NZ_CP128961.1 See Comparison
NZ_CP128943.1 See Comparison
NZ_CP128935.1 See Comparison
NZ_CP128925.1 See Comparison
NZ_AP026527.1 See Comparison
AP026516.1 See Comparison
AP026509.1 See Comparison
AP026506.1 See Comparison
AP026499.1 See Comparison
AP026491.1 See Comparison
AP026481.1 See Comparison
AP026478.1 See Comparison
AP026474.1 See Comparison
AP026458.1 See Comparison
NZ_CP128982.1 See Comparison
NZ_CP128974.1 See Comparison
NZ_CP128961.1 See Comparison
NZ_CP128943.1 See Comparison
NZ_CP128935.1 See Comparison
NZ_CP128925.1 See Comparison
NZ_AP026527.1 See Comparison
NZ_CP128929.1 See Comparison
NZ_CP128982.1 See Comparison
NZ_CP128974.1 See Comparison
NZ_CP128961.1 See Comparison
NZ_CP128943.1 See Comparison
NZ_CP128935.1 See Comparison
NZ_CP128925.1 See Comparison
NZ_AP026527.1 See Comparison
AP026516.1 See Comparison
AP026509.1 See Comparison
AP026506.1 See Comparison
AP026499.1 See Comparison
AP026491.1 See Comparison
AP026481.1 See Comparison
AP026478.1 See Comparison
AP026474.1 See Comparison
AP026458.1 See Comparison
NZ_AP026527.1 See Comparison
AP026516.1 See Comparison
AP026509.1 See Comparison
AP026506.1 See Comparison
AP026499.1 See Comparison
AP026491.1 See Comparison
AP026481.1 See Comparison
AP026478.1 See Comparison
AP026474.1 See Comparison
AP026458.1 See Comparison
NZ_CP128929.1 See Comparison
NZ_CP128982.1 See Comparison
NZ_CP128974.1 See Comparison
NZ_CP128961.1 See Comparison
NZ_CP128943.1 See Comparison
NZ_CP128935.1 See Comparison
NZ_CP128925.1 See Comparison
AP026516.1 See Comparison
AP026509.1 See Comparison
AP026506.1 See Comparison
AP026499.1 See Comparison
AP026491.1 See Comparison
AP026481.1 See Comparison
AP026478.1 See Comparison
AP026474.1 See Comparison
AP026458.1 See Comparison
AP026450.1 See Comparison
NZ_AP026527.1 See Comparison
NZ_CP128929.1 See Comparison
NZ_CP128982.1 See Comparison
NZ_CP128974.1 See Comparison
NZ_CP128961.1 See Comparison
NZ_CP128943.1 See Comparison
NZ_CP128935.1 See Comparison
NZ_CP128925.1 See Comparison
AP026516.1 See Comparison
AP026509.1 See Comparison
AP026506.1 See Comparison
AP026499.1 See Comparison
AP026491.1 See Comparison
AP026481.1 See Comparison
AP026478.1 See Comparison
AP026474.1 See Comparison
AP026458.1 See Comparison
NZ_CP128929.1 See Comparison
NZ_CP128982.1 See Comparison
NZ_CP128974.1 See Comparison
NZ_CP128961.1 See Comparison
NZ_CP128943.1 See Comparison
NZ_CP128935.1 See Comparison
NZ_CP128925.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore