Plasmid NZ_CP126770.1

Sequence

Nucleotide Information

Accession NZ_CP126770.1
Description Enterobacter hormaechei strain Ehh_23 plasmid pEh23_3, complete sequence
Source refseq
Topology circular
Length 47844 bp
GC Content 0.54 %
Created at NCBI Sept. 29, 2023



Assembly

Genome Data Information

Accession GCF_030847965.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 35394412

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Switzerland
Original Query Type name
Coordinates (Lat/Lon) 46.80/8.23
Address Switzerland

ECOSYSTEM
Original Query Homo sapiens,isolated bacterial culture,urine
Classification cell_culture,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGIS1 family transposasecopy
PGAGtype II toxin-antitoxin system VapC family toxincopy
PGAGvapBcopy
PGAGccdAcopy
PGAGccdBcopy
PGAGhypothetical proteincopy
PGAGsite-specific integrasecopy
PGAGGntP family transportercopy
PGAGHPr family phosphocarrier proteincopy
PGAGaldolasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 58 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_020306_00007MOBF2934030545plus94.776890755
repliconAY458016IncFIC3487235126minus84.674972.51e-63248
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2