Plasmid NZ_CP126768.1

Sequence

Nucleotide Information

Accession	NZ_CP126768.1
Description	Enterobacter hormaechei strain Ehh_23 plasmid pEh23_1, complete sequence
Source	refseq
Topology	circular
Length	174866 bp
GC Content	0.52 %
Created at NCBI	Sept. 29, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Enterobacter hormaechei (158836)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Enterobacter (547)
Species	Enterobacter_hormaechei (158836)
Strain

Assembly

Genome Data Information

Accession	GCF_030847965.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	35394412

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Switzerland
Original Query Type	name
Coordinates (Lat/Lon)	46.80/8.23
Address	Switzerland

ECOSYSTEM

Original Query	Homo sapiens,isolated bacterial culture,urine
Classification	cell_culture,host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP126762.1	See Comparison
NZ_CP126762.1	See Comparison
NZ_CP126762.1	See Comparison
NZ_CP126762.1	See Comparison
NZ_CP126762.1	See Comparison
NZ_CP126762.1	See Comparison
NZ_CP126762.1	See Comparison
NZ_CP126768.1	See Comparison

Plasmid Visualization

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Purples

Reds

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Greens

100

Hex

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G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	aac(3)-IIe		copy
amrfinderplus	aac(6')-Ib-cr5		copy
amrfinderplus	aph(3'')-Ib		copy
amrfinderplus	blaTEM-1		copy
amrfinderplus	dfrA14		copy
rgi	AAC(6')-Ib-cr6		copy
amrfinderplus	catA2		copy
rgi	catB3		copy
rgi	catII from Escherichia coli K-12		copy
amrfinderplus	blaOXA-1		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 197 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	CP019890_00139	IncFII	1	1014	plus	94.379	100	0	1557
replicon	CP039454_00078	IncFIB	36559	37569	minus	94.857	100	0	1580
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 2 of 2 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2