Plasmid NZ_CP123916.1

Sequence

Nucleotide Information

Accession NZ_CP123916.1
Description Acinetobacter bereziniae strain UCO-553 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 6078 bp
GC Content 0.39 %
Created at NCBI May 3, 2023



Assembly

Genome Data Information

Accession GCF_029916945.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 34266403

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 33.26S;70.38W
Original Query Type coordinates
Coordinates (Lat/Lon) -33.26/-70.38
Address Lo Barnechea, Provincia de Santiago, Santiago Metropolitan Region, Chile

ECOSYSTEM
Original Query Homo sapiens,tracheal aspirate
Classification host_associated,respiratory_system,trachea
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Respiratory tract infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']
  • Respiratory system disease (DOID:1579 )
    • A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP048132.1 See Comparison
NZ_CP018679.1 See Comparison
NZ_CP012954.1 See Comparison
NZ_CP007714.1 See Comparison
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NZ_CP123916.1 See Comparison
NZ_CP133669.1 See Comparison
NZ_CP041588.1 See Comparison
NZ_CP033845.1 See Comparison
NZ_CP027187.1 See Comparison
NZ_CP027181.1 See Comparison
NZ_CP129248.1 See Comparison
NZ_CP123921.1 See Comparison
NZ_CP139942.1 See Comparison
NZ_CP048669.1 See Comparison
NZ_KU869529.1 See Comparison
NZ_CP048132.1 See Comparison
NZ_CP087316.1 See Comparison
NZ_CP091597.1 See Comparison
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NZ_CP061680.1 See Comparison
NZ_CP061663.1 See Comparison
NZ_CP061638.1 See Comparison
NZ_CP061624.1 See Comparison
NZ_CP061594.1 See Comparison
NZ_CP061607.1 See Comparison
NZ_CP061686.1 See Comparison
NZ_CP061618.1 See Comparison
NZ_CP061580.1 See Comparison
NZ_CP018679.1 See Comparison
NZ_CP007714.1 See Comparison
NC_025068.1 See Comparison
NZ_CP087316.1 See Comparison
NZ_CP012954.1 See Comparison
NZ_CP129248.1 See Comparison
NZ_CP048669.1 See Comparison
NZ_CP041588.1 See Comparison
NZ_CP033845.1 See Comparison
NZ_CP027187.1 See Comparison
NZ_CP027181.1 See Comparison
NZ_CP133669.1 See Comparison
NZ_CP123921.1 See Comparison
NZ_CP139942.1 See Comparison
NZ_KU869529.1 See Comparison
NZ_CP061653.1 See Comparison
NZ_CP061602.1 See Comparison
NZ_CP061658.1 See Comparison
NZ_CP061668.1 See Comparison
NZ_CP061644.1 See Comparison
NZ_CP061633.1 See Comparison
NZ_CP061587.1 See Comparison
NZ_CP061680.1 See Comparison
NZ_CP061663.1 See Comparison
NZ_CP061638.1 See Comparison
NZ_CP061624.1 See Comparison
NZ_CP061594.1 See Comparison
NZ_CP061607.1 See Comparison
NZ_CP061686.1 See Comparison
NZ_CP061618.1 See Comparison
NZ_CP061580.1 See Comparison
NZ_CP048132.1 See Comparison
NZ_CP091597.1 See Comparison
NZ_CP018679.1 See Comparison
NZ_CP041588.1 See Comparison
NZ_CP012954.1 See Comparison
NZ_CP007714.1 See Comparison
NC_025068.1 See Comparison
NZ_CP033845.1 See Comparison
NZ_CP133669.1 See Comparison
NZ_CP027187.1 See Comparison
NZ_CP027181.1 See Comparison
NZ_CP048669.1 See Comparison
NZ_CP123921.1 See Comparison
NZ_CP129248.1 See Comparison
NZ_CP139942.1 See Comparison
NZ_KU869529.1 See Comparison
NZ_CP061653.1 See Comparison
NZ_CP061602.1 See Comparison
NZ_CP061658.1 See Comparison
NZ_CP061668.1 See Comparison
NZ_CP061644.1 See Comparison
NZ_CP061633.1 See Comparison
NZ_CP061587.1 See Comparison
NZ_CP061680.1 See Comparison
NZ_CP061663.1 See Comparison
NZ_CP061638.1 See Comparison
NZ_CP061624.1 See Comparison
NZ_CP061594.1 See Comparison
NZ_CP061607.1 See Comparison
NZ_CP061686.1 See Comparison
NZ_CP061618.1 See Comparison
NZ_CP061580.1 See Comparison
NZ_CP018679.1 See Comparison
NZ_CP087316.1 See Comparison
NZ_CP048132.1 See Comparison
NZ_CP091597.1 See Comparison
NZ_CP012954.1 See Comparison
NZ_CP123921.1 See Comparison
NC_025068.1 See Comparison
NZ_CP041588.1 See Comparison
NZ_CP027187.1 See Comparison
NZ_CP027181.1 See Comparison
NZ_CP133669.1 See Comparison
NZ_CP007714.1 See Comparison
NZ_CP033845.1 See Comparison
NZ_CP129248.1 See Comparison
NZ_CP139942.1 See Comparison
NZ_CP048669.1 See Comparison
NZ_KU869529.1 See Comparison
NZ_CP048132.1 See Comparison
NZ_CP087316.1 See Comparison
NZ_CP061653.1 See Comparison
NZ_CP061602.1 See Comparison
NZ_CP061658.1 See Comparison
NZ_CP061668.1 See Comparison
NZ_CP061644.1 See Comparison
NZ_CP061633.1 See Comparison
NZ_CP061587.1 See Comparison
NZ_CP061680.1 See Comparison
NZ_CP061663.1 See Comparison
NZ_CP061638.1 See Comparison
NZ_CP061624.1 See Comparison
NZ_CP061594.1 See Comparison
NZ_CP061607.1 See Comparison
NZ_CP061686.1 See Comparison
NZ_CP061618.1 See Comparison
NZ_CP061580.1 See Comparison
NZ_CP091597.1 See Comparison
NZ_CP027187.1 See Comparison
NZ_CP018679.1 See Comparison
NZ_CP012954.1 See Comparison
NZ_CP007714.1 See Comparison
NC_025068.1 See Comparison
NZ_CP041588.1 See Comparison
NZ_CP033845.1 See Comparison
NZ_CP027181.1 See Comparison
NZ_CP139942.1 See Comparison
NZ_CP133669.1 See Comparison
NZ_CP129248.1 See Comparison
NZ_CP123921.1 See Comparison
NZ_KU869529.1 See Comparison
NZ_CP048669.1 See Comparison
NZ_CP061653.1 See Comparison
NZ_CP061602.1 See Comparison
NZ_CP061658.1 See Comparison
NZ_CP061668.1 See Comparison
NZ_CP061644.1 See Comparison
NZ_CP061633.1 See Comparison
NZ_CP061587.1 See Comparison
NZ_CP061680.1 See Comparison
NZ_CP061663.1 See Comparison
NZ_CP061638.1 See Comparison
NZ_CP061624.1 See Comparison
NZ_CP061594.1 See Comparison
NZ_CP061607.1 See Comparison
NZ_CP061686.1 See Comparison
NZ_CP061618.1 See Comparison
NZ_CP061580.1 See Comparison
NZ_CP012954.1 See Comparison
NZ_CP087316.1 See Comparison
NZ_CP091597.1 See Comparison
NZ_CP048132.1 See Comparison
NZ_CP018679.1 See Comparison
NZ_CP027187.1 See Comparison
NZ_CP007714.1 See Comparison
NC_025068.1 See Comparison
NZ_CP041588.1 See Comparison
NZ_CP033845.1 See Comparison
NZ_CP027181.1 See Comparison
NZ_KU869529.1 See Comparison
NZ_CP133669.1 See Comparison
NZ_CP129248.1 See Comparison
NZ_CP123921.1 See Comparison
NZ_CP139942.1 See Comparison
NZ_CP048669.1 See Comparison
NZ_CP061653.1 See Comparison
NZ_CP061602.1 See Comparison
NZ_CP061658.1 See Comparison
NZ_CP061668.1 See Comparison
NZ_CP061644.1 See Comparison
NZ_CP061633.1 See Comparison
NZ_CP061587.1 See Comparison
NZ_CP061680.1 See Comparison
NZ_CP061663.1 See Comparison
NZ_CP061638.1 See Comparison
NZ_CP061624.1 See Comparison
NZ_CP061594.1 See Comparison
NZ_CP061607.1 See Comparison
NZ_CP061686.1 See Comparison
NZ_CP061618.1 See Comparison
NZ_CP061580.1 See Comparison
NZ_CP007714.1 See Comparison
NZ_CP091597.1 See Comparison
NZ_CP048132.1 See Comparison
NZ_CP012954.1 See Comparison
NZ_CP087316.1 See Comparison
NZ_CP018679.1 See Comparison
NZ_CP041588.1 See Comparison
NC_025068.1 See Comparison
NZ_CP133669.1 See Comparison
NZ_CP027181.1 See Comparison
NZ_CP033845.1 See Comparison
NZ_CP027187.1 See Comparison
NZ_CP129248.1 See Comparison
NZ_CP139942.1 See Comparison
NZ_CP123921.1 See Comparison
NZ_CP061644.1 See Comparison
NZ_CP048669.1 See Comparison
NZ_KU869529.1 See Comparison
NZ_CP061633.1 See Comparison
NZ_CP061587.1 See Comparison
NZ_CP061680.1 See Comparison
NZ_CP061594.1 See Comparison
NZ_CP061663.1 See Comparison
NZ_CP061607.1 See Comparison
NZ_CP061686.1 See Comparison
NZ_CP061638.1 See Comparison
NZ_CP061618.1 See Comparison
NZ_CP061624.1 See Comparison
NZ_CP061580.1 See Comparison
NZ_CP061653.1 See Comparison
NZ_CP061602.1 See Comparison
NZ_CP061658.1 See Comparison
NZ_CP061668.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2