Plasmid NZ_CP048132.1

Sequence

Nucleotide Information

Accession	NZ_CP048132.1
Description	Acinetobacter baumannii strain D46 plasmid pD46-1, complete sequence
Source	refseq
Topology	circular
Length	6078 bp
GC Content	0.39 %
Created at NCBI	June 11, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Acinetobacter baumannii (470)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Moraxellales (2887326)
Family	Moraxellaceae (468)
Genus	Acinetobacter (469)
Species	Acinetobacter_baumannii (470)
Strain

Assembly

Genome Data Information

Accession	GCF_018831125.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	13874778

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	33.87S;151.21E
Original Query Type	coordinates
Coordinates (Lat/Lon)	-33.87/151.21
Address	St James Arcade, 76-82, Castlereagh Street, Sydney, Council of the City of Sydney, New South Wales, 2000, Australia

ECOSYSTEM

Original Query	Homo sapiens,mid stream urine
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	UTI
DOID/SYMP	Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP133669.1	See Comparison
NZ_CP129248.1	See Comparison
NZ_CP123916.1	See Comparison
NZ_CP123921.1	See Comparison
NZ_CP139942.1	See Comparison
NZ_KU869529.1	See Comparison
NZ_CP048669.1	See Comparison
NZ_CP061653.1	See Comparison
NZ_CP061602.1	See Comparison
NZ_CP061658.1	See Comparison
NZ_CP061668.1	See Comparison
NZ_CP061644.1	See Comparison
NZ_CP061633.1	See Comparison
NZ_CP061587.1	See Comparison
NZ_CP061680.1	See Comparison
NZ_CP061663.1	See Comparison
NZ_CP061638.1	See Comparison
NZ_CP061624.1	See Comparison
NZ_CP061594.1	See Comparison
NZ_CP061607.1	See Comparison
NZ_CP061686.1	See Comparison
NZ_CP061618.1	See Comparison
NZ_CP061580.1	See Comparison
NZ_CP087316.1	See Comparison
NZ_CP033845.1	See Comparison
NZ_CP018679.1	See Comparison
NZ_CP012954.1	See Comparison
NC_025068.1	See Comparison
NZ_CP091597.1	See Comparison
NZ_CP007714.1	See Comparison
NZ_CP041588.1	See Comparison
NZ_CP048669.1	See Comparison
NZ_CP027187.1	See Comparison
NZ_CP027181.1	See Comparison
NZ_CP139942.1	See Comparison
NZ_CP133669.1	See Comparison
NZ_CP129248.1	See Comparison
NZ_CP123916.1	See Comparison
NZ_CP123921.1	See Comparison
NZ_KU869529.1	See Comparison
NZ_CP091597.1	See Comparison
NZ_CP061653.1	See Comparison
NZ_CP061602.1	See Comparison
NZ_CP061658.1	See Comparison
NZ_CP061668.1	See Comparison
NZ_CP061644.1	See Comparison
NZ_CP061633.1	See Comparison
NZ_CP061587.1	See Comparison
NZ_CP061680.1	See Comparison
NZ_CP061663.1	See Comparison
NZ_CP061638.1	See Comparison
NZ_CP061624.1	See Comparison
NZ_CP061594.1	See Comparison
NZ_CP061607.1	See Comparison
NZ_CP061686.1	See Comparison
NZ_CP061618.1	See Comparison
NZ_CP061580.1	See Comparison
NZ_CP087316.1	See Comparison
NZ_CP007714.1	See Comparison
NZ_CP018679.1	See Comparison
NZ_CP012954.1	See Comparison
NZ_CP033845.1	See Comparison
NC_025068.1	See Comparison
NZ_CP041588.1	See Comparison
NZ_KU869529.1	See Comparison
NZ_CP027181.1	See Comparison
NZ_CP133669.1	See Comparison
NZ_CP129248.1	See Comparison
NZ_CP139942.1	See Comparison
NZ_CP027187.1	See Comparison
NZ_CP123916.1	See Comparison
NZ_CP123921.1	See Comparison
NZ_CP033845.1	See Comparison
NZ_CP091597.1	See Comparison
NZ_CP018679.1	See Comparison
NZ_CP012954.1	See Comparison
NC_025068.1	See Comparison
NZ_CP041588.1	See Comparison
NZ_CP048669.1	See Comparison
NZ_CP061653.1	See Comparison
NZ_CP061602.1	See Comparison
NZ_CP061658.1	See Comparison
NZ_CP061668.1	See Comparison
NZ_CP061644.1	See Comparison
NZ_CP061633.1	See Comparison
NZ_CP061587.1	See Comparison
NZ_CP061680.1	See Comparison
NZ_CP061663.1	See Comparison
NZ_CP061638.1	See Comparison
NZ_CP061624.1	See Comparison
NZ_CP061594.1	See Comparison
NZ_CP061607.1	See Comparison
NZ_CP061686.1	See Comparison
NZ_CP061618.1	See Comparison
NZ_CP061580.1	See Comparison
NZ_CP087316.1	See Comparison
NZ_CP007714.1	See Comparison
NZ_CP129248.1	See Comparison
NZ_CP027187.1	See Comparison
NZ_CP133669.1	See Comparison
NZ_CP027181.1	See Comparison
NZ_CP123916.1	See Comparison
NZ_CP123921.1	See Comparison
NZ_KU869529.1	See Comparison
NZ_CP139942.1	See Comparison
NZ_CP087316.1	See Comparison
NZ_CP048669.1	See Comparison
NZ_CP061653.1	See Comparison
NZ_CP061602.1	See Comparison
NZ_CP061658.1	See Comparison
NZ_CP061668.1	See Comparison
NZ_CP061644.1	See Comparison
NZ_CP061633.1	See Comparison
NZ_CP061587.1	See Comparison
NZ_CP061680.1	See Comparison
NZ_CP061663.1	See Comparison
NZ_CP061638.1	See Comparison
NZ_CP061624.1	See Comparison
NZ_CP061594.1	See Comparison
NZ_CP061607.1	See Comparison
NZ_CP061686.1	See Comparison
NZ_CP061618.1	See Comparison
NZ_CP061580.1	See Comparison
NZ_CP012954.1	See Comparison
NZ_CP018679.1	See Comparison
NZ_CP091597.1	See Comparison
NC_025068.1	See Comparison
NZ_CP007714.1	See Comparison
NZ_CP041588.1	See Comparison
NZ_CP033845.1	See Comparison
NZ_CP027181.1	See Comparison
NZ_CP129248.1	See Comparison
NZ_CP027187.1	See Comparison
NZ_CP133669.1	See Comparison
NZ_CP139942.1	See Comparison
NZ_CP123916.1	See Comparison
NZ_CP123921.1	See Comparison
NZ_CP061653.1	See Comparison
NZ_KU869529.1	See Comparison
NZ_CP048669.1	See Comparison
NZ_CP061602.1	See Comparison
NZ_CP061658.1	See Comparison
NZ_CP061668.1	See Comparison
NZ_CP061644.1	See Comparison
NZ_CP061633.1	See Comparison
NZ_CP061587.1	See Comparison
NZ_CP061680.1	See Comparison
NZ_CP061663.1	See Comparison
NZ_CP061638.1	See Comparison
NZ_CP061624.1	See Comparison
NZ_CP061594.1	See Comparison
NZ_CP061607.1	See Comparison
NZ_CP061686.1	See Comparison
NZ_CP061618.1	See Comparison
NZ_CP061580.1	See Comparison
NZ_CP018679.1	See Comparison
NZ_CP091597.1	See Comparison
NZ_CP087316.1	See Comparison
NZ_CP012954.1	See Comparison
NC_025068.1	See Comparison
NZ_CP007714.1	See Comparison
NZ_CP123916.1	See Comparison
NZ_CP027187.1	See Comparison
NZ_CP027181.1	See Comparison
NZ_CP133669.1	See Comparison
NZ_CP129248.1	See Comparison
NZ_CP041588.1	See Comparison
NZ_CP033845.1	See Comparison
NZ_CP123921.1	See Comparison
NZ_CP139942.1	See Comparison
NZ_KU869529.1	See Comparison
NZ_CP091597.1	See Comparison
NZ_CP048669.1	See Comparison
NZ_CP061653.1	See Comparison
NZ_CP061602.1	See Comparison
NZ_CP061658.1	See Comparison
NZ_CP061668.1	See Comparison
NZ_CP061644.1	See Comparison
NZ_CP061633.1	See Comparison
NZ_CP061587.1	See Comparison
NZ_CP061680.1	See Comparison
NZ_CP061663.1	See Comparison
NZ_CP061638.1	See Comparison
NZ_CP061624.1	See Comparison
NZ_CP061594.1	See Comparison
NZ_CP061607.1	See Comparison
NZ_CP061686.1	See Comparison
NZ_CP061618.1	See Comparison
NZ_CP061580.1	See Comparison
NZ_CP087316.1	See Comparison
NZ_CP007714.1	See Comparison
NZ_CP018679.1	See Comparison
NZ_CP012954.1	See Comparison
NZ_CP041588.1	See Comparison
NC_025068.1	See Comparison
NZ_CP033845.1	See Comparison
NZ_CP048132.1	See Comparison
NZ_CP027187.1	See Comparison
NZ_CP027181.1	See Comparison
NZ_CP133669.1	See Comparison
NZ_CP129248.1	See Comparison
NZ_CP048669.1	See Comparison
NZ_CP087316.1	See Comparison
NZ_CP091597.1	See Comparison
NZ_CP123916.1	See Comparison
NZ_CP123921.1	See Comparison
NZ_CP139942.1	See Comparison
NZ_KU869529.1	See Comparison
NZ_CP061653.1	See Comparison
NZ_CP061602.1	See Comparison
NZ_CP061658.1	See Comparison
NZ_CP061668.1	See Comparison
NZ_CP061644.1	See Comparison
NZ_CP061633.1	See Comparison
NZ_CP061587.1	See Comparison
NZ_CP061680.1	See Comparison
NZ_CP061663.1	See Comparison
NZ_CP061638.1	See Comparison
NZ_CP061624.1	See Comparison
NZ_CP061594.1	See Comparison
NZ_CP061607.1	See Comparison
NZ_CP061686.1	See Comparison
NZ_CP061618.1	See Comparison
NZ_CP061580.1	See Comparison
NZ_CP018679.1	See Comparison
NZ_CP007714.1	See Comparison
NZ_CP012954.1	See Comparison
NZ_CP027187.1	See Comparison
NC_025068.1	See Comparison
NZ_CP041588.1	See Comparison
NZ_CP033845.1	See Comparison
NZ_CP027181.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP018679.1

Sequence

Accession: NZ_CP018679.1
Description: Acinetobacter baumannii strain LAC4 plasmid pALAC4-2, complete sequence
Source: refseq
Created at NCBI: March 21, 2017

Host Taxonomy

Assigned Host: Acinetobacter baumannii (470)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Moraxellales (2887326)
Family : Moraxellaceae (468)
Genus : Acinetobacter (469)
Species : Acinetobacter_baumannii (470)
Strain:

Biosample

Accession: 5362953

GEOGRAPHICAL INFORMATION

Original Query: 34.05N;118.25W
Original Query Type: coordinates
Address: Junipero Serra Building, 320, West 4th Street, Historic Core, Downtown, Los Angeles, Los Angeles County, California, 90013, United States
Coordinates (Lat/Lon): 34.05/-118.25

ECOSYSTEM

Original Query: None
Classification: None
Host-associated Taxon:

Visualization

NZ_KU869529.1

Sequence

Accession: NZ_KU869529.1
Description: Acinetobacter baumannii strain A297(RUH875) plasmid pA297-1 (pRAY*) clone GC1, complete sequence
Source: refseq
Created at NCBI: May 18, 2020

Host Taxonomy

Assigned Host: Acinetobacter baumannii (470)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Moraxellales (2887326)
Family : Moraxellaceae (468)
Genus : Acinetobacter (469)
Species : Acinetobacter_baumannii (470)
Strain:

Biosample

Accession: 14227233

GEOGRAPHICAL INFORMATION

Original Query: Netherlands
Original Query Type: name
Address: Netherlands
Coordinates (Lat/Lon): 52.24/5.53

ECOSYSTEM

Original Query: None
Classification: None
Host-associated Taxon:

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2