Plasmid NZ_CP122765.1

Sequence

Nucleotide Information

Accession NZ_CP122765.1
Description Escherichia coli strain ETEC1739 plasmid unnamed7, complete sequence
Source refseq
Topology circular
Length 47686 bp
GC Content 0.43 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030013575.1
Assembly Coverage 225


Biosample

Curated Collection Information
Accession 32549616

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Belgium
Original Query Type name
Coordinates (Lat/Lon) 50.64/4.67
Address Belgium

ECOSYSTEM
Original Query Sus scrofa,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query enteric colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP020088.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
CP122812.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_CP020088.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_LR882060.1 See Comparison
CP122812.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_CP020088.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP122845.1 See Comparison
CP122812.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_CP020088.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_CP115825.1 See Comparison
CP122812.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP020088.1 See Comparison
CP122812.1 See Comparison
NZ_MH507589.1 See Comparison
CP122812.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_CP020088.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_CP122765.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_CP020088.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
CP122812.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_LR882060.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaTEM-1copy
amrfinderplusqnrS1copy
PGAGNACHT domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGdqlBcopy
PGAGIS3-like element IS2 family transposasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGplasmid pRiA4b ORF-3 family proteincopy
PGAGrecombinase family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 63 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTEU164802MOBP2545826048minus10010001092
replicon000215__KC853434_00019IncX12402824474minus98.8811000798
repliconJN247852IncX32512725463minus80.588898.03e-65254
relaxaseNC_019096_00001MOBP2992331086plus99.4851000796
mate-pair-formationNC_023277_00163MPF_T3367535825plus10010001459
mate-pair-formationNC_019046_00026MPF_T3689438021plus99.2021000689
mate-pair-formationNC_019067_00043MPF_T3827038980plus99.5781004.85e-137431
mate-pair-formationNC_010860_00022MPF_T3898839914plus98.7061000631
mate-pair-formationNC_017624_00009MPF_T4215543951plus99.4999801196
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 9 of 9 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2