Plasmid NZ_CP020088.1

Sequence

Nucleotide Information

Accession NZ_CP020088.1
Description Shigella flexneri 1a strain 0670 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 47674 bp
GC Content 0.43 %
Created at NCBI Aug. 4, 2017



Assembly

Genome Data Information

Accession GCF_002240135.1
Assembly Coverage 237.11


Biosample

Curated Collection Information
Accession 6478366

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Hangzhou
Original Query Type name
Coordinates (Lat/Lon) 30.25/120.21
Address China,Hangzhou

ECOSYSTEM
Original Query Homo sapiens,cell culture,hospitalized patients
Classification cell_culture,disease,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP012734.1 See Comparison
NZ_CP122765.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
CP122812.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_MH121702.1 See Comparison
CP122812.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_CP122765.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_CP122845.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP122765.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
NZ_CP115825.1 See Comparison
CP122812.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_CP122765.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_CP020088.1 See Comparison
CP122812.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_AP023429.1 See Comparison
NZ_CP122765.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
NZ_CP012734.1 See Comparison
CP122812.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_CP012734.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_AP023429.1 See Comparison
CP122812.1 See Comparison
NZ_CP122865.1 See Comparison
NZ_CP122845.1 See Comparison
NZ_CP122765.1 See Comparison
NZ_CP115825.1 See Comparison
NZ_KJ201886.1 See Comparison
NZ_MH507589.1 See Comparison
NZ_MH121702.1 See Comparison
NZ_LR882060.1 See Comparison
NZ_AP023429.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore