Plasmid NZ_CP117397.1

Sequence

Nucleotide Information

Accession NZ_CP117397.1
Description Salmonella enterica subsp. enterica serovar Uganda strain RM016 plasmid pRM016_1, complete sequence
Source refseq
Topology circular
Length 100527 bp
GC Content 0.52 %
Created at NCBI March 3, 2023



Assembly

Genome Data Information

Accession GCF_028892825.1
Assembly Coverage 469


Biosample

Curated Collection Information
Accession 32950774

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,midwestern
Original Query Type name
Coordinates (Lat/Lon) 33.87/-98.52
Address USA,midwestern

ECOSYSTEM
Original Query Bos taurus,Water from tanks in pens
Classification aquatic,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP117372.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
CP082457.1 See Comparison
CP082607.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
CP082607.1 See Comparison
CP082457.1 See Comparison
CP082607.1 See Comparison
CP082457.1 See Comparison
CP082607.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
CP082457.1 See Comparison
CP082607.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117397.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
CP082457.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
CP082457.1 See Comparison
CP082607.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore