Plasmid CP082607.1

Sequence

Nucleotide Information

Accession CP082607.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N17S620 isolate 17KS07GB10-S2 plasmid pN17S620, complete sequence
Source insd
Topology circular
Length 106003 bp
GC Content 0.53 %
Created at NCBI Sept. 9, 2021



Assembly

Genome Data Information

Accession GCA_019915745.1
Assembly Coverage 546


Biosample

Curated Collection Information
Accession 20351460

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,KS
Original Query Type name
Coordinates (Lat/Lon) 38.27/-98.58
Address USA,KS

ECOSYSTEM
Original Query Ground Beef
Classification food,meat
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP082607.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117397.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117397.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
NZ_CP117397.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117397.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison
NZ_CP117397.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117383.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117397.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117372.1 See Comparison
NZ_CP117397.1 See Comparison
NZ_CP117395.1 See Comparison
NZ_CP117387.1 See Comparison
NZ_CP117385.1 See Comparison
NZ_CP117389.1 See Comparison
NZ_CP117379.1 See Comparison
NZ_CP117377.1 See Comparison
NZ_CP117391.1 See Comparison
NZ_CP117381.1 See Comparison
NZ_CP117383.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2