Plasmid NZ_CP117187.1

Sequence

Nucleotide Information

Accession NZ_CP117187.1
Description Salmonella enterica subsp. enterica strain 123 plasmid p123_3, complete sequence
Source refseq
Topology circular
Length 2317 bp
GC Content 0.49 %
Created at NCBI Feb. 16, 2023



Assembly

Genome Data Information

Accession GCF_028596085.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 33038040

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Sanmen
Original Query Type name
Coordinates (Lat/Lon) 29.11/121.39
Address China,Sanmen

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OV753996.1 See Comparison
NZ_OV753991.1 See Comparison
NZ_OV754014.1 See Comparison
NZ_OX030735.1 See Comparison
NZ_OW969882.1 See Comparison
NZ_OW848985.1 See Comparison
OW969788.1 See Comparison
OW969702.1 See Comparison
OW968400.1 See Comparison
OW968346.1 See Comparison
OW848896.1 See Comparison
OW849515.1 See Comparison
OW849511.1 See Comparison
OW849373.1 See Comparison
OW849194.1 See Comparison
NZ_CP085760.1 See Comparison
NZ_CP084865.1 See Comparison
NZ_CP075558.1 See Comparison
NZ_CP073777.1 See Comparison
OW968400.1 See Comparison
NZ_OV753996.1 See Comparison
NZ_OV753991.1 See Comparison
NZ_OV754014.1 See Comparison
NZ_OX030735.1 See Comparison
NZ_OW969882.1 See Comparison
NZ_OW848985.1 See Comparison
OW969788.1 See Comparison
OW968346.1 See Comparison
OW969702.1 See Comparison
OW848896.1 See Comparison
OW849515.1 See Comparison
OW849511.1 See Comparison
OW849373.1 See Comparison
OW849194.1 See Comparison
NZ_CP084865.1 See Comparison
NZ_CP075558.1 See Comparison
NZ_CP085760.1 See Comparison
NZ_OV753996.1 See Comparison
NZ_CP117187.1 See Comparison
NZ_CP073777.1 See Comparison
NZ_OV753991.1 See Comparison
NZ_OV754014.1 See Comparison
NZ_OX030735.1 See Comparison
NZ_OW969882.1 See Comparison
OW968400.1 See Comparison
NZ_OW848985.1 See Comparison
OW969788.1 See Comparison
OW968346.1 See Comparison
OW969702.1 See Comparison
OW848896.1 See Comparison
OW849373.1 See Comparison
OW849515.1 See Comparison
OW849511.1 See Comparison
OW849194.1 See Comparison
NZ_CP075558.1 See Comparison
NZ_CP085760.1 See Comparison
NZ_CP084865.1 See Comparison
NZ_OX030735.1 See Comparison
NZ_CP073777.1 See Comparison
NZ_OV753996.1 See Comparison
NZ_OV753991.1 See Comparison
NZ_OV754014.1 See Comparison
NZ_OW969882.1 See Comparison
OW969788.1 See Comparison
NZ_OW848985.1 See Comparison
OW969702.1 See Comparison
OW968346.1 See Comparison
OW848896.1 See Comparison
OW968400.1 See Comparison
OW849515.1 See Comparison
OW849511.1 See Comparison
OW849373.1 See Comparison
NZ_CP075558.1 See Comparison
OW849194.1 See Comparison
NZ_CP085760.1 See Comparison
NZ_CP084865.1 See Comparison
NZ_OV753996.1 See Comparison
NZ_CP073777.1 See Comparison
NZ_OV753991.1 See Comparison
NZ_OV754014.1 See Comparison
NZ_OW848985.1 See Comparison
NZ_OX030735.1 See Comparison
OW969702.1 See Comparison
NZ_OW969882.1 See Comparison
NZ_CP075558.1 See Comparison
OW969788.1 See Comparison
OW968346.1 See Comparison
OW848896.1 See Comparison
OW849515.1 See Comparison
OW849511.1 See Comparison
OW849373.1 See Comparison
OW968400.1 See Comparison
OW849194.1 See Comparison
NZ_CP085760.1 See Comparison
NZ_CP084865.1 See Comparison
NZ_OX030735.1 See Comparison
NZ_CP073777.1 See Comparison
NZ_OV753996.1 See Comparison
NZ_OV753991.1 See Comparison
NZ_OV754014.1 See Comparison
NZ_OW969882.1 See Comparison
OW969788.1 See Comparison
NZ_OW848985.1 See Comparison
OW968346.1 See Comparison
OW969702.1 See Comparison
OW848896.1 See Comparison
OW968400.1 See Comparison
OW849515.1 See Comparison
OW849511.1 See Comparison
OW849373.1 See Comparison
OW849194.1 See Comparison
NZ_CP073777.1 See Comparison
NZ_CP085760.1 See Comparison
NZ_CP084865.1 See Comparison
NZ_CP075558.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore