Plasmid NZ_CP113031.1

Sequence

Nucleotide Information

Accession	NZ_CP113031.1
Description	Staphylococcus aureus strain Akali plasmid unnamed2
Source	refseq
Topology	linear
Length	5187 bp
GC Content	0.29 %
Created at NCBI	Dec. 6, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Staphylococcus aureus (1280)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Bacillales (1385)
Family	Staphylococcaceae (90964)
Genus	Staphylococcus (1279)
Species	Staphylococcus_aureus (1280)
Strain

Assembly

Genome Data Information

Accession	GCF_026625365.1
Assembly Coverage	306

Biosample

Curated Collection Information

Accession	31523637

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	24.23321N;120.9417E
Original Query Type	coordinates
Coordinates (Lat/Lon)	24.23/120.94
Address	Henglingshan Trail, Zhongkeng Village, Heping District, Taichung, Taiwan

ECOSYSTEM

Original Query	environmental
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP083260.1	See Comparison
NC_022605.1	See Comparison
NC_013375.2	See Comparison
NC_013302.1	See Comparison
NC_017332.1	See Comparison
NC_010687.1	See Comparison
NZ_CP039450.1	See Comparison
NZ_LR130517.1	See Comparison
NZ_CP131654.1	See Comparison
NZ_CP131667.1	See Comparison
NZ_CP131672.1	See Comparison
NZ_CP149494.1	See Comparison
NZ_CP058313.1	See Comparison
CP141382.1	See Comparison
NZ_CP121205.1	See Comparison
NZ_CP033979.1	See Comparison
NZ_CP033997.1	See Comparison
NZ_CP034006.1	See Comparison
NZ_CP034012.1	See Comparison
NZ_CP034257.1	See Comparison
NZ_CP034009.1	See Comparison
NZ_CP034000.1	See Comparison
NZ_CP033984.1	See Comparison
NZ_CP033988.1	See Comparison
NZ_CP034003.1	See Comparison
NZ_CP033994.1	See Comparison
NZ_CP033974.1	See Comparison
NZ_CP113012.1	See Comparison
NZ_CP113022.1	See Comparison
NZ_CP098729.1	See Comparison
NZ_CP083260.1	See Comparison
NC_013375.2	See Comparison
NC_017332.1	See Comparison
NC_022605.1	See Comparison
NC_013302.1	See Comparison
NZ_CP131654.1	See Comparison
NC_010687.1	See Comparison
NZ_LR130517.1	See Comparison
NZ_CP039450.1	See Comparison
NZ_CP131667.1	See Comparison
NZ_CP131672.1	See Comparison
NZ_CP034257.1	See Comparison
NZ_CP149494.1	See Comparison
NZ_CP058313.1	See Comparison
CP141382.1	See Comparison
NZ_CP034009.1	See Comparison
NZ_CP034000.1	See Comparison
NZ_CP033984.1	See Comparison
NZ_CP033988.1	See Comparison
NZ_CP034003.1	See Comparison
NZ_CP033994.1	See Comparison
NZ_CP033974.1	See Comparison
NZ_CP033979.1	See Comparison
NZ_CP033997.1	See Comparison
NZ_CP034006.1	See Comparison
NZ_CP034012.1	See Comparison
NZ_CP113012.1	See Comparison
NZ_CP121205.1	See Comparison
NZ_CP113022.1	See Comparison
NZ_CP098729.1	See Comparison
NC_010687.1	See Comparison
NZ_CP083260.1	See Comparison
NC_013375.2	See Comparison
NC_013302.1	See Comparison
NC_022605.1	See Comparison
NC_017332.1	See Comparison
NZ_LR130517.1	See Comparison
NZ_CP039450.1	See Comparison
NZ_CP149494.1	See Comparison
NZ_CP131654.1	See Comparison
NZ_CP131667.1	See Comparison
NZ_CP131672.1	See Comparison
CP141382.1	See Comparison
NZ_CP113012.1	See Comparison
NZ_CP058313.1	See Comparison
NZ_CP121205.1	See Comparison
NZ_CP113022.1	See Comparison
NZ_CP034257.1	See Comparison
NZ_CP034009.1	See Comparison
NZ_CP034000.1	See Comparison
NZ_CP033984.1	See Comparison
NZ_CP033988.1	See Comparison
NZ_CP034003.1	See Comparison
NZ_CP033994.1	See Comparison
NZ_CP033974.1	See Comparison
NZ_CP033979.1	See Comparison
NZ_CP033997.1	See Comparison
NZ_CP034006.1	See Comparison
NZ_CP034012.1	See Comparison
NZ_CP083260.1	See Comparison
NZ_CP098729.1	See Comparison
NC_022605.1	See Comparison
NC_010687.1	See Comparison
NC_017332.1	See Comparison
NC_013375.2	See Comparison
NC_013302.1	See Comparison
NZ_LR130517.1	See Comparison
NZ_CP039450.1	See Comparison
NZ_CP034257.1	See Comparison
NZ_CP131654.1	See Comparison
NZ_CP131667.1	See Comparison
NZ_CP131672.1	See Comparison
NZ_CP058313.1	See Comparison
NZ_CP149494.1	See Comparison
CP141382.1	See Comparison
NZ_CP034009.1	See Comparison
NZ_CP034000.1	See Comparison
NZ_CP033984.1	See Comparison
NZ_CP033988.1	See Comparison
NZ_CP034003.1	See Comparison
NZ_CP033994.1	See Comparison
NZ_CP033974.1	See Comparison
NZ_CP033979.1	See Comparison
NZ_CP033997.1	See Comparison
NZ_CP034006.1	See Comparison
NZ_CP034012.1	See Comparison
NZ_CP121205.1	See Comparison
NZ_CP098729.1	See Comparison
NZ_CP113012.1	See Comparison
NZ_CP113022.1	See Comparison
NC_022605.1	See Comparison
NZ_CP083260.1	See Comparison
NC_010687.1	See Comparison
NC_013375.2	See Comparison
NC_013302.1	See Comparison
NC_017332.1	See Comparison
NZ_LR130517.1	See Comparison
NZ_CP039450.1	See Comparison
NZ_CP149494.1	See Comparison
NZ_CP131654.1	See Comparison
NZ_CP131667.1	See Comparison
NZ_CP131672.1	See Comparison
NC_013375.2	See Comparison
CP141382.1	See Comparison
NZ_CP121205.1	See Comparison
NZ_CP113012.1	See Comparison
NZ_CP113022.1	See Comparison
NZ_CP083260.1	See Comparison
NC_022605.1	See Comparison
NZ_CP058313.1	See Comparison
NZ_CP034257.1	See Comparison
NZ_CP034009.1	See Comparison
NZ_CP034000.1	See Comparison
NZ_CP033984.1	See Comparison
NZ_CP033988.1	See Comparison
NZ_CP034003.1	See Comparison
NZ_CP033994.1	See Comparison
NZ_CP033974.1	See Comparison
NZ_CP033979.1	See Comparison
NZ_CP033997.1	See Comparison
NZ_CP034006.1	See Comparison
NZ_CP034012.1	See Comparison
NZ_CP098729.1	See Comparison
NC_013302.1	See Comparison
NC_017332.1	See Comparison
NZ_LR130517.1	See Comparison
NZ_CP039450.1	See Comparison
NC_010687.1	See Comparison
CP141382.1	See Comparison
NZ_CP149494.1	See Comparison
NZ_CP131654.1	See Comparison
NZ_CP131667.1	See Comparison
NZ_CP131672.1	See Comparison
NZ_CP034257.1	See Comparison
NZ_CP058313.1	See Comparison
NZ_CP034012.1	See Comparison
NZ_CP034009.1	See Comparison
NZ_CP034000.1	See Comparison
NZ_CP033984.1	See Comparison
NZ_CP033988.1	See Comparison
NZ_CP034003.1	See Comparison
NZ_CP033994.1	See Comparison
NZ_CP033974.1	See Comparison
NZ_CP033979.1	See Comparison
NZ_CP033997.1	See Comparison
NZ_CP034006.1	See Comparison
NZ_CP121205.1	See Comparison
NZ_CP083260.1	See Comparison
NZ_CP113031.1	See Comparison
NZ_CP113012.1	See Comparison
NZ_CP113022.1	See Comparison
NZ_CP098729.1	See Comparison
NC_022605.1	See Comparison
NC_017332.1	See Comparison
NZ_CP039450.1	See Comparison
NC_010687.1	See Comparison
NC_013375.2	See Comparison
NC_013302.1	See Comparison
NZ_CP131654.1	See Comparison
NZ_LR130517.1	See Comparison
NZ_CP131667.1	See Comparison
NZ_CP058313.1	See Comparison
NZ_CP131672.1	See Comparison
CP141382.1	See Comparison
NZ_CP149494.1	See Comparison
NZ_CP034257.1	See Comparison
NZ_CP034009.1	See Comparison
NZ_CP034000.1	See Comparison
NZ_CP033984.1	See Comparison
NZ_CP033988.1	See Comparison
NZ_CP034003.1	See Comparison
NZ_CP033994.1	See Comparison
NZ_CP033974.1	See Comparison
NZ_CP033979.1	See Comparison
NZ_CP033997.1	See Comparison
NZ_CP034006.1	See Comparison
NZ_CP034012.1	See Comparison
NZ_CP098729.1	See Comparison
NZ_CP121205.1	See Comparison
NZ_CP113012.1	See Comparison
NZ_CP113022.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2