Plasmid NZ_CP113031.1
Sequence
Nucleotide Information
| Accession | NZ_CP113031.1 |
|---|---|
| Description | Staphylococcus aureus strain Akali plasmid unnamed2 |
| Source | refseq |
| Topology | linear |
| Length | 5187 bp |
| GC Content | 0.29 % |
| Created at NCBI | Dec. 6, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Staphylococcus aureus (1280) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Bacillota (1239) |
| Class | Bacilli (91061) |
| Order | Bacillales (1385) |
| Family | Staphylococcaceae (90964) |
| Genus | Staphylococcus (1279) |
| Species | Staphylococcus_aureus (1280) |
| Strain |
Biosample
Curated Collection Information
| Accession | 31523637 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 24.23321N;120.9417E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 24.23/120.94 |
| Address | Henglingshan Trail, Zhongkeng Village, Heping District, Taichung, Taiwan |
ECOSYSTEM
| Original Query | environmental |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | protein rep | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | rep_cluster_1017 | copy | ||
| MOB-typer | rep_cluster_1017 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 6 of 6 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000266__NC_022227_00004 | rep_cluster_1017 | 1 | 780 | minus | 95.897 | 100 | 0 | 1262 |
| replicon | GQ900473 | rep_cluster_1017 | 2797 | 3792 | minus | 96.687 | 100 | 0 | 1657 |
| oriT | LN890519 | MOB_unknown | 2562 | 2727 | minus | 99.398 | 100 | 1.13e-79 | 302 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |