Plasmid NZ_CP033988.1

Sequence

Nucleotide Information

Accession NZ_CP033988.1
Description Staphylococcus aureus strain P1D14C1 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 3011 bp
GC Content 0.29 %
Created at NCBI Dec. 14, 2019



Assembly

Genome Data Information

Accession GCF_009739865.1
Assembly Coverage 561


Biosample

Curated Collection Information
Accession 10374693

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.7732N;35.1853E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.77/35.19
Address Shaarei Tsedek, Herzl, Yefe Nof, Kfar Shaul, Jerusalem, Jerusalem Subdistrict, Jerusalem District, 9546105, Israel

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query ENDOCARDITIS
DOID/SYMP
  • Endocarditis (DOID:10314 )
    • A endocardium disease characterized by inflammation of the endocardium of the heart chambers and valves.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP083260.1 See Comparison
NC_022605.1 See Comparison
NC_013375.2 See Comparison
NC_013302.1 See Comparison
NC_017332.1 See Comparison
NC_010687.1 See Comparison
NZ_CP039450.1 See Comparison
NZ_LR130517.1 See Comparison
NZ_CP149494.1 See Comparison
NZ_CP131654.1 See Comparison
NZ_CP131667.1 See Comparison
NZ_CP131672.1 See Comparison
NZ_CP083260.1 See Comparison
NZ_CP058313.1 See Comparison
NZ_CP034257.1 See Comparison
NZ_CP034009.1 See Comparison
NZ_CP034000.1 See Comparison
NZ_CP033984.1 See Comparison
NZ_CP034003.1 See Comparison
NZ_CP033994.1 See Comparison
NZ_CP033974.1 See Comparison
NZ_CP033979.1 See Comparison
NZ_CP033997.1 See Comparison
NZ_CP034006.1 See Comparison
NZ_CP034012.1 See Comparison
CP141382.1 See Comparison
NZ_CP121205.1 See Comparison
NZ_CP113031.1 See Comparison
NZ_CP113012.1 See Comparison
NZ_CP113022.1 See Comparison
NZ_CP098729.1 See Comparison
NC_013375.2 See Comparison
NC_022605.1 See Comparison
NC_013302.1 See Comparison
NC_017332.1 See Comparison
NZ_CP039450.1 See Comparison
NC_010687.1 See Comparison
NZ_CP131672.1 See Comparison
NZ_CP131654.1 See Comparison
NZ_LR130517.1 See Comparison
NZ_CP058313.1 See Comparison
NZ_CP149494.1 See Comparison
NZ_CP131667.1 See Comparison
CP141382.1 See Comparison
NZ_CP121205.1 See Comparison
NZ_CP034257.1 See Comparison
NZ_CP034009.1 See Comparison
NZ_CP034000.1 See Comparison
NZ_CP033984.1 See Comparison
NZ_CP034003.1 See Comparison
NZ_CP033994.1 See Comparison
NZ_CP033974.1 See Comparison
NZ_CP033979.1 See Comparison
NZ_CP033997.1 See Comparison
NZ_CP034006.1 See Comparison
NZ_CP034012.1 See Comparison
NZ_CP113031.1 See Comparison
NZ_CP113012.1 See Comparison
NZ_CP113022.1 See Comparison
NZ_CP098729.1 See Comparison
NZ_CP083260.1 See Comparison
NC_013302.1 See Comparison
NC_017332.1 See Comparison
NC_022605.1 See Comparison
NZ_CP039450.1 See Comparison
NC_010687.1 See Comparison
NC_013375.2 See Comparison
NZ_CP131654.1 See Comparison
NZ_LR130517.1 See Comparison
NZ_CP131667.1 See Comparison
NZ_CP131672.1 See Comparison
CP141382.1 See Comparison
NZ_CP149494.1 See Comparison
NZ_CP121205.1 See Comparison
NZ_CP034257.1 See Comparison
NZ_CP034009.1 See Comparison
NZ_CP034000.1 See Comparison
NZ_CP033984.1 See Comparison
NZ_CP034003.1 See Comparison
NZ_CP033994.1 See Comparison
NZ_CP033974.1 See Comparison
NZ_CP033979.1 See Comparison
NZ_CP033997.1 See Comparison
NZ_CP034006.1 See Comparison
NZ_CP034012.1 See Comparison
NZ_CP058313.1 See Comparison
NZ_CP113031.1 See Comparison
NZ_CP113012.1 See Comparison
NZ_CP113022.1 See Comparison
NZ_CP098729.1 See Comparison
NZ_CP083260.1 See Comparison
NC_013302.1 See Comparison
NC_022605.1 See Comparison
NC_017332.1 See Comparison
NC_013375.2 See Comparison
NZ_CP039450.1 See Comparison
NC_010687.1 See Comparison
NZ_CP131654.1 See Comparison
NZ_LR130517.1 See Comparison
NZ_CP131667.1 See Comparison
NZ_CP149494.1 See Comparison
NZ_CP131672.1 See Comparison
CP141382.1 See Comparison
NZ_CP058313.1 See Comparison
NZ_CP121205.1 See Comparison
NZ_CP034257.1 See Comparison
NZ_CP034009.1 See Comparison
NZ_CP034000.1 See Comparison
NZ_CP033984.1 See Comparison
NZ_CP033988.1 See Comparison
NZ_CP034003.1 See Comparison
NZ_CP033994.1 See Comparison
NZ_CP033974.1 See Comparison
NZ_CP033979.1 See Comparison
NZ_CP033997.1 See Comparison
NZ_CP034006.1 See Comparison
NZ_CP034012.1 See Comparison
NC_022605.1 See Comparison
NZ_CP098729.1 See Comparison
NC_013302.1 See Comparison
NZ_CP113031.1 See Comparison
NZ_CP113012.1 See Comparison
NZ_CP113022.1 See Comparison
NZ_CP083260.1 See Comparison
NZ_CP039450.1 See Comparison
NC_013375.2 See Comparison
NC_010687.1 See Comparison
NC_017332.1 See Comparison
NZ_CP058313.1 See Comparison
NZ_CP131654.1 See Comparison
NZ_CP131667.1 See Comparison
NZ_CP131672.1 See Comparison
NZ_CP149494.1 See Comparison
CP141382.1 See Comparison
NZ_LR130517.1 See Comparison
NZ_CP034257.1 See Comparison
NZ_CP034009.1 See Comparison
NZ_CP034000.1 See Comparison
NZ_CP033984.1 See Comparison
NZ_CP034003.1 See Comparison
NZ_CP033994.1 See Comparison
NZ_CP033974.1 See Comparison
NZ_CP033979.1 See Comparison
NZ_CP033997.1 See Comparison
NZ_CP034006.1 See Comparison
NZ_CP034012.1 See Comparison
NZ_CP113031.1 See Comparison
NZ_CP121205.1 See Comparison
NZ_CP113012.1 See Comparison
NZ_CP113022.1 See Comparison
NZ_CP098729.1 See Comparison
NC_013375.2 See Comparison
NZ_CP083260.1 See Comparison
NC_022605.1 See Comparison
NC_013302.1 See Comparison
NC_010687.1 See Comparison
NC_017332.1 See Comparison
NZ_CP039450.1 See Comparison
NZ_CP131654.1 See Comparison
NZ_LR130517.1 See Comparison
NZ_CP131667.1 See Comparison
NZ_CP131672.1 See Comparison
NC_013375.2 See Comparison
NZ_CP149494.1 See Comparison
CP141382.1 See Comparison
NZ_CP034257.1 See Comparison
NZ_CP034009.1 See Comparison
NZ_CP034000.1 See Comparison
NZ_CP033984.1 See Comparison
NZ_CP034003.1 See Comparison
NZ_CP033994.1 See Comparison
NZ_CP033974.1 See Comparison
NZ_CP033979.1 See Comparison
NZ_CP033997.1 See Comparison
NZ_CP034006.1 See Comparison
NZ_CP034012.1 See Comparison
NZ_CP121205.1 See Comparison
NZ_CP113031.1 See Comparison
NZ_CP113012.1 See Comparison
NZ_CP113022.1 See Comparison
NZ_CP098729.1 See Comparison
NZ_CP058313.1 See Comparison
NZ_CP083260.1 See Comparison
NC_022605.1 See Comparison
NC_013302.1 See Comparison
NC_017332.1 See Comparison
NC_010687.1 See Comparison
NZ_CP039450.1 See Comparison
NZ_CP131667.1 See Comparison
NZ_LR130517.1 See Comparison
NZ_CP131672.1 See Comparison
NZ_CP131654.1 See Comparison
NZ_CP149494.1 See Comparison
NZ_CP058313.1 See Comparison
CP141382.1 See Comparison
NZ_CP034257.1 See Comparison
NZ_CP034009.1 See Comparison
NZ_CP034000.1 See Comparison
NZ_CP033984.1 See Comparison
NZ_CP034003.1 See Comparison
NZ_CP033994.1 See Comparison
NZ_CP033974.1 See Comparison
NZ_CP033979.1 See Comparison
NZ_CP033997.1 See Comparison
NZ_CP034006.1 See Comparison
NZ_CP034012.1 See Comparison
NZ_CP121205.1 See Comparison
NZ_CP113031.1 See Comparison
NZ_CP113012.1 See Comparison
NZ_CP113022.1 See Comparison
NZ_CP098729.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2