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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP109742.1
Sequence
Nucleotide Information
Accession
NZ_CP109742.1
Description
Serratia nevei strain 2017-45-174 plasmid p2017-45-174_2, complete sequence
Source
refseq
Topology
circular
Length
59632 bp
GC Content
0.52 %
Created at NCBI
June 7, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Serratia nevei (2703794)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Yersiniaceae (1903411)
Genus
Serratia (613)
Species
Serratia_nevei (2703794)
Strain
Assembly
Genome Data Information
Accession
GCF_030179475.1
Assembly Coverage
74.769
Biosample
Curated Collection Information
Accession
30974103
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA
Original Query Type
name
Coordinates (Lat/Lon)
39.78/-100.45
Address
USA
ECOSYSTEM
Original Query
Homo sapiens,whole organism,swab
Classification
host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP109743.1
NZ_CP109741.1
NZ_CP109740.1
Similar Plasmids
based on Mash distance
CP114147.1
See Comparison
NZ_CP118555.1
See Comparison
CP114147.1
See Comparison
NZ_CP118555.1
See Comparison
NZ_CP118555.1
See Comparison
CP114147.1
See Comparison
NZ_CP118555.1
See Comparison
NZ_CP118555.1
See Comparison
CP114147.1
See Comparison
NZ_CP118555.1
See Comparison
CP114147.1
See Comparison
CP114147.1
See Comparison
NZ_CP109742.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore