Plasmid CP114147.1

Sequence

Nucleotide Information

Accession CP114147.1
Description Enterobacter hormaechei strain 2022CK-00493 plasmid unnamed3, complete sequence
Source insd
Topology circular
Length 60471 bp
GC Content 0.52 %
Created at NCBI Jan. 6, 2023



Assembly

Genome Data Information

Accession GCA_027577865.1
Assembly Coverage 43


Biosample

Curated Collection Information
Accession 31152634

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGrepAcopy
PGAGIS110-like element IS4321 family transposasecopy
PGAGrecombinase family proteincopy
PGAGconjugal transfer protein TrbCcopy
PGAGDsbC family proteincopy
PGAGconjugal transfer protein TrbAcopy
PGAGlytic transglycosylase domain-containing proteincopy
PGAGDUF1496 domain-containing proteincopy
PGAGtype II CAAX endopeptidase family proteincopy
PGAGpemIcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 85 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconU27345IncL/M5980260471plus99.40310001216
relaxaseNC_004464_00056MOBP3752939505plus99.39310001373
mate-pair-formationNC_004464_00105MPF_I70059089minus99.42410001407
mate-pair-formationNC_005246_00057MPF_I4006140795plus99.592952.01e-162505
mate-pair-formationNC_019063_00094MPF_I4551846027plus99.4121001.74e-108346
mate-pair-formationNC_019344_00078MPF_I4669347403plus98.7341005.1200000000000006e-129408
mate-pair-formationNC_004464_00066MPF_I4741548563plus99.4781000646
mate-pair-formationNC_004464_00068MPF_I4993950640plus94.4441001.39e-127404
mate-pair-formationNC_019154_00069MPF_I5066751194plus1001008.71e-100321
mate-pair-formationNC_005246_00069MPF_I5121451600plus1001002.86e-65220
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2