Plasmid NZ_CP103792.1

Sequence

Nucleotide Information

Accession NZ_CP103792.1
Description Salmonella enterica subsp. enterica serovar Infantis strain MRS17_00712 plasmid pESI_like, complete sequence
Source refseq
Topology circular
Length 278481 bp
GC Content 0.50 %
Created at NCBI Sept. 5, 2022



Assembly

Genome Data Information

Accession GCF_024917215.1
Assembly Coverage 360


Biosample

Curated Collection Information
Accession 30540908

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Austria
Original Query Type name
Coordinates (Lat/Lon) 47.20/13.20
Address Austria

ECOSYSTEM
Original Query chicken,tissue sample
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
NZ_CP103792.1 See Comparison
NZ_CP047882.1 See Comparison
CP113997.1 See Comparison
NZ_CP088902.1 See Comparison
NZ_CP088902.1 See Comparison
NZ_CP047882.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
CP113997.1 See Comparison
NZ_CP047882.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
CP113997.1 See Comparison
NZ_CP088902.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
NZ_CP047882.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
NZ_CP047882.1 See Comparison
CP113997.1 See Comparison
NZ_CP088902.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP088902.1 See Comparison
CP113997.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
NZ_CP047882.1 See Comparison
CP113997.1 See Comparison
NZ_CP047882.1 See Comparison
NZ_CP088902.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
CP113997.1 See Comparison
NZ_CP088902.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2