Plasmid NZ_CP088902.1

Sequence

Nucleotide Information

Accession NZ_CP088902.1
Description Salmonella enterica subsp. enterica serovar Muenchen strain 180135033 plasmid pESI, complete sequence
Source refseq
Topology circular
Length 285167 bp
GC Content 0.50 %
Created at NCBI March 16, 2022



Assembly

Genome Data Information

Accession GCF_022559825.1
Assembly Coverage 2700


Biosample

Curated Collection Information
Accession 23543477

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 32.0467N;34.8429E
Original Query Type coordinates
Coordinates (Lat/Lon) 32.05/34.84
Address Tel HaShomer Hospital, Mandes, Qiryat Krinitzi, Ramat Gan, Tel Aviv Subdistrict, Tel-Aviv District, 5262657, Israel

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Salmonella gastroenteritis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
NZ_OW849833.1 See Comparison
NZ_OY754840.1 See Comparison
NZ_CP047882.1 See Comparison
CP113985.1 See Comparison
CP113988.1 See Comparison
CP113991.1 See Comparison
CP113993.1 See Comparison
CP113995.1 See Comparison
CP113997.1 See Comparison
CP113998.1 See Comparison
CP114001.1 See Comparison
CP114003.1 See Comparison
NZ_CP103792.1 See Comparison
CP143561.1 See Comparison
NZ_OW849779.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
CP143561.1 See Comparison
NZ_OY754840.1 See Comparison
NZ_CP047882.1 See Comparison
CP113985.1 See Comparison
CP113988.1 See Comparison
CP113991.1 See Comparison
CP113993.1 See Comparison
CP113995.1 See Comparison
CP113997.1 See Comparison
CP113998.1 See Comparison
CP114001.1 See Comparison
CP114003.1 See Comparison
NZ_OW849833.1 See Comparison
NZ_CP103792.1 See Comparison
NZ_OW849779.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
NZ_OY754840.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
CP113985.1 See Comparison
CP143561.1 See Comparison
NZ_CP047882.1 See Comparison
CP113988.1 See Comparison
CP113991.1 See Comparison
CP113993.1 See Comparison
CP113995.1 See Comparison
CP113997.1 See Comparison
CP113998.1 See Comparison
CP114001.1 See Comparison
CP114003.1 See Comparison
NZ_CP103792.1 See Comparison
NZ_OW849833.1 See Comparison
NZ_OW849779.1 See Comparison
NZ_OY754840.1 See Comparison
NZ_CP047882.1 See Comparison
NZ_CP103792.1 See Comparison
NZ_CP088902.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
CP143561.1 See Comparison
CP113985.1 See Comparison
CP113988.1 See Comparison
CP113991.1 See Comparison
CP113993.1 See Comparison
CP113995.1 See Comparison
CP113997.1 See Comparison
CP113998.1 See Comparison
CP114001.1 See Comparison
CP114003.1 See Comparison
NZ_OY754840.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
NZ_OW849833.1 See Comparison
NZ_OW849779.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
CP113985.1 See Comparison
CP143561.1 See Comparison
NZ_CP047882.1 See Comparison
CP113995.1 See Comparison
CP113997.1 See Comparison
CP113998.1 See Comparison
CP114001.1 See Comparison
CP114003.1 See Comparison
CP113988.1 See Comparison
CP113991.1 See Comparison
CP113993.1 See Comparison
NZ_OW849833.1 See Comparison
NZ_CP103792.1 See Comparison
NZ_OW849779.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
NZ_CP047882.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
CP143561.1 See Comparison
NZ_OY754840.1 See Comparison
NZ_CP103792.1 See Comparison
CP113985.1 See Comparison
CP113988.1 See Comparison
CP113991.1 See Comparison
CP113993.1 See Comparison
CP113995.1 See Comparison
CP113997.1 See Comparison
CP113998.1 See Comparison
CP114001.1 See Comparison
CP114003.1 See Comparison
NZ_OW849833.1 See Comparison
NZ_OW849779.1 See Comparison
NZ_CP120344.1 See Comparison
NZ_CP120340.1 See Comparison
NZ_CP120332.1 See Comparison
NZ_CP120326.1 See Comparison
NZ_CP120350.1 See Comparison
NZ_CP120338.1 See Comparison
NZ_CP120328.1 See Comparison
NZ_CP120348.1 See Comparison
NZ_CP120336.1 See Comparison
NZ_CP120346.1 See Comparison
NZ_CP120334.1 See Comparison
CP143561.1 See Comparison
NZ_OY754840.1 See Comparison
NZ_CP103792.1 See Comparison
CP113985.1 See Comparison
CP113988.1 See Comparison
CP113991.1 See Comparison
CP113993.1 See Comparison
CP113995.1 See Comparison
CP113997.1 See Comparison
CP113998.1 See Comparison
CP114001.1 See Comparison
CP114003.1 See Comparison
NZ_CP047882.1 See Comparison
NZ_OW849833.1 See Comparison
NZ_OW849779.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2