Plasmid NZ_CP103677.1

Sequence

Nucleotide Information

Accession NZ_CP103677.1
Description Klebsiella pneumoniae strain 2946 plasmid pMB4773_1, complete sequence
Source refseq
Topology circular
Length 207376 bp
GC Content 0.52 %
Created at NCBI Sept. 6, 2022



Assembly

Genome Data Information

Accession GCF_024918095.1
Assembly Coverage 153


Biosample

Curated Collection Information
Accession 28174011

PLASMID INFORMATION
Genotype ST307

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP052148.1 See Comparison
CP052506.1 See Comparison
NZ_CP066535.1 See Comparison
NZ_CP065462.1 See Comparison
OW968351.1 See Comparison
OW969754.1 See Comparison
OW969704.1 See Comparison
OW968284.1 See Comparison
OW848817.1 See Comparison
OW967950.1 See Comparison
OW968460.1 See Comparison
OW848869.1 See Comparison
OW849227.1 See Comparison
OW968351.1 See Comparison
NZ_CP034282.1 See Comparison
CP052148.1 See Comparison
CP052506.1 See Comparison
OW968460.1 See Comparison
NZ_CP066535.1 See Comparison
NZ_CP065462.1 See Comparison
OW969754.1 See Comparison
OW969704.1 See Comparison
OW968284.1 See Comparison
OW848817.1 See Comparison
OW848869.1 See Comparison
OW967950.1 See Comparison
OW849227.1 See Comparison
NZ_CP065462.1 See Comparison
NZ_CP034282.1 See Comparison
NZ_CP066535.1 See Comparison
CP052148.1 See Comparison
CP052506.1 See Comparison
OW969754.1 See Comparison
NZ_CP103677.1 See Comparison
OW969704.1 See Comparison
OW968351.1 See Comparison
OW968460.1 See Comparison
OW968284.1 See Comparison
CP052148.1 See Comparison
OW967950.1 See Comparison
OW848817.1 See Comparison
OW849227.1 See Comparison
OW848869.1 See Comparison
NZ_CP034282.1 See Comparison
CP052506.1 See Comparison
NZ_CP065462.1 See Comparison
NZ_CP066535.1 See Comparison
OW968460.1 See Comparison
OW969704.1 See Comparison
OW967950.1 See Comparison
OW969754.1 See Comparison
OW968351.1 See Comparison
OW968284.1 See Comparison
OW848817.1 See Comparison
OW848869.1 See Comparison
OW849227.1 See Comparison
CP052148.1 See Comparison
NZ_CP034282.1 See Comparison
CP052506.1 See Comparison
NZ_CP066535.1 See Comparison
OW968460.1 See Comparison
NZ_CP065462.1 See Comparison
OW968351.1 See Comparison
OW969754.1 See Comparison
OW969704.1 See Comparison
OW967950.1 See Comparison
OW968284.1 See Comparison
OW848817.1 See Comparison
OW848869.1 See Comparison
NZ_CP065462.1 See Comparison
OW849227.1 See Comparison
CP052506.1 See Comparison
NZ_CP066535.1 See Comparison
NZ_CP034282.1 See Comparison
CP052148.1 See Comparison
OW968460.1 See Comparison
OW969754.1 See Comparison
OW969704.1 See Comparison
OW968284.1 See Comparison
OW848869.1 See Comparison
OW968351.1 See Comparison
OW967950.1 See Comparison
OW849227.1 See Comparison
OW848817.1 See Comparison
NZ_CP034282.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore