Plasmid NZ_CP103619.1

Sequence

Nucleotide Information

Accession NZ_CP103619.1
Description Klebsiella pneumoniae strain 4383 plasmid pMB6487_1, complete sequence
Source refseq
Topology circular
Length 218258 bp
GC Content 0.52 %
Created at NCBI Sept. 5, 2022



Assembly

Genome Data Information

Accession GCF_024917595.1
Assembly Coverage 153


Biosample

Curated Collection Information
Accession 28174058

PLASMID INFORMATION
Genotype ST15

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgimphAcopy
rgiMrxcopy
rgiAAC(6')-Ib-cr6copy
rgiaadA2copy
amrfinderpluspcoScopy
amrfinderplusqacEdelta1copy
amrfinderplusqacEdelta1copy
amrfinderpluspcoAcopy
amrfinderpluspcoDcopy
amrfinderpluspcoRcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 244 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000107__CP014778_00094IncFIB11011plus90.20810001319
repliconCP017721_00179rep_cluster_2183111178112005minus82.289960715
replicon000128__CP023916IncFII112040112273plus1001005.72e-119433
relaxaseNC_021231_00058MOBF131006136261minus95.9510003296
relaxaseCP035180_00077MOBF136273137025minus92.431000385
mate-pair-formationNC_021502_00150MPF_T136264138570minus99.35110001449
mate-pair-formationNC_014312_00141MPF_F141189144008minus10010001882
mate-pair-formationNC_019165_00034MPF_F144011145366minus95.575990801
mate-pair-formationNC_021654_00016MPF_F148260150221minus98.3189801234
mate-pair-formationNC_019389_00080MPF_F150274150909minus97.6421001.84e-136428
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2