Plasmid NZ_CP055211.1
Sequence
Nucleotide Information
| Accession | NZ_CP055211.1 |
|---|---|
| Description | Klebsiella pneumoniae strain STEFF_2 plasmid unnamed1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 223722 bp |
| GC Content | 0.53 % |
| Created at NCBI | Feb. 24, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 13925526 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 22.4N;114.2E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 22.40/114.20 |
| Address | Lok Lam Road, Lok Lo Ha, Pat Tsz Wo, Lok Lo Ha Village, Sha Tin District, New Territories, Hong Kong, China |
ECOSYSTEM
| Original Query | Shatin WWTPs_2 WWTPs effluent |
|---|---|
| Classification | wastewater,wwtp |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaCTX-M-15 | copy | ||
| amrfinderplus | aac(6')-Ib-cr5 | copy | ||
| amrfinderplus | aph(3')-Ia | copy | ||
| amrfinderplus | aadA2 | copy | ||
| amrfinderplus | dfrA12 | copy | ||
| amrfinderplus | hsp20 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | blaOXA-1 | copy | ||
| amrfinderplus | clpK | copy | ||
| rgi | mphA | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 249 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000107__CP014778_00094 | IncFIB | 1 | 1011 | plus | 90.208 | 100 | 0 | 1319 |
| replicon | CP017721_00179 | rep_cluster_2183 | 116020 | 116847 | minus | 82.289 | 96 | 0 | 715 |
| replicon | 000128__CP023916 | IncFII | 116882 | 117115 | plus | 100 | 100 | 5.72e-119 | 433 |
| relaxase | NC_021231_00058 | MOBF | 135848 | 141103 | minus | 95.95 | 100 | 0 | 3296 |
| relaxase | CP035180_00077 | MOBF | 141115 | 141867 | minus | 92.43 | 100 | 0 | 385 |
| mate-pair-formation | NC_021502_00150 | MPF_T | 141106 | 143412 | minus | 99.351 | 100 | 0 | 1449 |
| mate-pair-formation | NC_014312_00141 | MPF_F | 146031 | 148850 | minus | 100 | 100 | 0 | 1882 |
| mate-pair-formation | NC_019165_00034 | MPF_F | 148853 | 150208 | minus | 95.575 | 99 | 0 | 801 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 153102 | 155063 | minus | 98.318 | 98 | 0 | 1234 |
| mate-pair-formation | NC_019389_00080 | MPF_F | 155116 | 155751 | minus | 97.642 | 100 | 1.84e-136 | 428 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |