Plasmid NZ_CP101250.1
Sequence
Nucleotide Information
| Accession | NZ_CP101250.1 |
|---|---|
| Description | Escherichia coli strain EC21Z-097 plasmid pEC21Z097-4K, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 4060 bp |
| GC Content | 0.51 % |
| Created at NCBI | July 19, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 29593410 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Zhejiang |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 29.00/120.00 |
| Address | China,Zhejiang |
ECOSYSTEM
| Original Query | Homo sapiens,cell culture |
|---|---|
| Classification | cell_culture,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NC_013327 | MOBQ | 2376 | 2553 | minus | 100 | 100 | 5.61e-88 | 329 |
| oriT | NC_009791 | MOBQ | 2553 | 2912 | plus | 100 | 100 | 0 | 665 |
| replicon | 001211__AP017616_00002 | rep_cluster_1778 | 887 | 1588 | minus | 100 | 100 | 0 | 1297 |
| relaxase | NC_011411_00002 | MOBQ | 3 | 638 | plus | 96.226 | 99 | 1.1700000000000002e-132 | 431 |
| relaxase | NC_011411_00002 | MOBQ | 2467 | 4059 | plus | 96.636 | 99 | 0 | 1028 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 5 of 5 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |