Plasmid NZ_CP101247.1

Sequence

Nucleotide Information

Accession NZ_CP101247.1
Description Escherichia coli strain EC21Z-097 plasmid pEC21Z097-85K, complete sequence
Source refseq
Topology circular
Length 85299 bp
GC Content 0.50 %
Created at NCBI July 19, 2022



Assembly

Genome Data Information

Accession GCF_024298525.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 29593410

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Zhejiang
Original Query Type name
Coordinates (Lat/Lon) 29.00/120.00
Address China,Zhejiang

ECOSYSTEM
Original Query Homo sapiens,cell culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGyacAcopy
PGAGyacBcopy
PGAG3'-5' exonucleasecopy
PGAGhypothetical proteincopy
PGAGProQ/FINO family proteincopy
PGAGyagAcopy
PGAGhypothetical proteincopy
PGAGParA family plasmid-partitioning AAA ATPasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 104 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTJN253636MOBP2958929681minus1001004.37e-41172
repliconCP012627IncI1/B/O11032plus10010001906
relaxaseNC_019097MOBP3005132744plus94.3219901668
mate-pair-formationNC_019097_00056MPF_I3282035078minus98.8059201444
mate-pair-formationNC_022267_00057MPF_I4467145870minus99.251000769
mate-pair-formationNC_019111_00038MPF_I5064851025minus96.032941.3000000000000002e-44161
mate-pair-formationNC_023290_00086MPF_I5107951603minus99.4291003.43e-100322
mate-pair-formationNC_015965_00072MPF_I5160652307minus99.5731004.56e-153477
mate-pair-formationNC_019097_00075MPF_I5360254582minus99.6941000657
mate-pair-formationNC_022267_00069MPF_I5463855285minus99.074915.7e-143448
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2