PLSDB
v. 2024_05_31_v2
Home
Browse
Sequence Search
Statistics
Download
API
FAQ
Sequence
Host Taxonomy
Assembly
Biosample
Similar Plasmids
Visualization
Annotations
Typing
Plasmid NZ_CP100749.1
Sequence
Nucleotide Information
Accession
NZ_CP100749.1
Description
Salmonella enterica subsp. enterica serovar Montevideo strain R17.4849 plasmid pR17.4849_3.4k, complete sequence
Source
refseq
Topology
circular
Length
3428 bp
GC Content
0.50 %
Created at NCBI
July 15, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (115981)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCF_024266285.1
Assembly Coverage
252
Biosample
Curated Collection Information
Accession
29431221
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Taiwan,Taipei City
Original Query Type
name
Coordinates (Lat/Lon)
25.04/121.56
Address
Taiwan,Taipei City
ECOSYSTEM
Original Query
Homo sapiens,stool
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
Host-associated Age
1
Host-associated Sex
female
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP100751.1
NZ_CP100750.1
NZ_CP100748.1
Similar Plasmids
based on Mash distance
NZ_CP084220.1
See Comparison
NZ_CP030228.1
See Comparison
NZ_CP137190.1
See Comparison
NZ_CP099322.1
See Comparison
NZ_AP026681.1
See Comparison
NZ_CP099322.1
See Comparison
NZ_CP102743.1
See Comparison
NZ_AP026681.1
See Comparison
NZ_CP084220.1
See Comparison
NZ_CP030228.1
See Comparison
NZ_CP137190.1
See Comparison
NZ_CP100749.1
See Comparison
NZ_CP102743.1
See Comparison
NZ_CP030228.1
See Comparison
NZ_CP084220.1
See Comparison
NZ_CP099322.1
See Comparison
NZ_AP026681.1
See Comparison
NZ_CP137190.1
See Comparison
NZ_CP102743.1
See Comparison
NZ_CP030228.1
See Comparison
NZ_CP084220.1
See Comparison
NZ_AP026681.1
See Comparison
NZ_CP137190.1
See Comparison
NZ_CP137190.1
See Comparison
NZ_CP030228.1
See Comparison
NZ_CP099322.1
See Comparison
NZ_CP102743.1
See Comparison
NZ_CP084220.1
See Comparison
NZ_CP102743.1
See Comparison
NZ_AP026681.1
See Comparison
NZ_CP099322.1
See Comparison
NZ_CP102743.1
See Comparison
NZ_CP084220.1
See Comparison
NZ_CP030228.1
See Comparison
NZ_CP137190.1
See Comparison
NZ_AP026681.1
See Comparison
NZ_CP099322.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore