Plasmid NZ_CP100748.1

Sequence

Nucleotide Information

Accession	NZ_CP100748.1
Description	Salmonella enterica subsp. enterica serovar Montevideo strain R17.4849 plasmid pR17.4849_84k, complete sequence
Source	refseq
Topology	circular
Length	84323 bp
GC Content	0.53 %
Created at NCBI	July 15, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (115981)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCF_024266285.1
Assembly Coverage	252

Biosample

Curated Collection Information

Accession	29431221

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Taiwan,Taipei City
Original Query Type	name
Coordinates (Lat/Lon)	25.04/121.56
Address	Taiwan,Taipei City

ECOSYSTEM

Original Query	Homo sapiens,stool
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)
Host-associated Age	1
Host-associated Sex	female

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP100748.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

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Greens

100

Hex

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G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	mph(A)		copy
amrfinderplus	qacEdelta1		copy
amrfinderplus	merT		copy
amrfinderplus	dfrA12		copy
amrfinderplus	merC		copy
amrfinderplus	tet(B)		copy
amrfinderplus	sul1		copy
amrfinderplus	aadA2		copy
rgi	mphA		copy
rgi	aadA2		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 95 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	KJ541069_00010	rep_cluster_2335	43846	44083	minus	94.538	89	1.89e-99	368
mate-pair-formation	NC_009425_00107	MPF_F	10066	10653	minus	89.286	80	5.81e-112	360
mate-pair-formation	NC_015963_00068	MPF_F	11258	11557	minus	85	100	4.61e-56	192
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 3 of 3 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2