Plasmid NZ_CP100528.1

Sequence

Nucleotide Information

Accession NZ_CP100528.1
Description Escherichia coli strain LH13-b plasmid pLH13-b-C, complete sequence
Source refseq
Topology circular
Length 46338 bp
GC Content 0.46 %
Created at NCBI July 15, 2022



Assembly

Genome Data Information

Accession GCF_024225435.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 29499313

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Switzerland
Original Query Type name
Coordinates (Lat/Lon) 46.80/8.23
Address Switzerland

ECOSYSTEM
Original Query Gallus gallus domesticus,whole organism,pooled poultry feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP100483.1 See Comparison
NZ_KX618704.1 See Comparison
NZ_KX618701.1 See Comparison
NZ_KX618700.1 See Comparison
NZ_KX618702.1 See Comparison
NZ_MT859329.1 See Comparison
NZ_CP100483.1 See Comparison
NZ_CP100481.1 See Comparison
NZ_CP100517.1 See Comparison
NZ_CP100543.1 See Comparison
NZ_CP100513.1 See Comparison
NZ_CP100499.1 See Comparison
NZ_CP100505.1 See Comparison
NZ_CP100524.1 See Comparison
NZ_CP100489.1 See Comparison
NZ_CP100549.1 See Comparison
NZ_CP100495.1 See Comparison
NZ_KX618704.1 See Comparison
NZ_KX618701.1 See Comparison
NZ_KX618700.1 See Comparison
NZ_KX618702.1 See Comparison
NZ_KX618703.1 See Comparison
NZ_KX618698.1 See Comparison
NZ_KX618703.1 See Comparison
NZ_KX618698.1 See Comparison
NZ_KX618699.1 See Comparison
NZ_MT158478.1 See Comparison
NZ_KX618699.1 See Comparison
NZ_MT859329.1 See Comparison
NZ_CP100481.1 See Comparison
NZ_CP100517.1 See Comparison
NZ_CP100543.1 See Comparison
NZ_CP100513.1 See Comparison
NZ_CP100499.1 See Comparison
NZ_CP100505.1 See Comparison
NZ_CP100524.1 See Comparison
NZ_CP100489.1 See Comparison
NZ_CP100549.1 See Comparison
NZ_CP100495.1 See Comparison
NZ_CP100483.1 See Comparison
NZ_MT158478.1 See Comparison
NZ_KX618704.1 See Comparison
NZ_KX618701.1 See Comparison
NZ_KX618700.1 See Comparison
NZ_KX618702.1 See Comparison
NZ_KX618703.1 See Comparison
NZ_KX618698.1 See Comparison
NZ_KX618699.1 See Comparison
NZ_MT859329.1 See Comparison
NZ_CP100481.1 See Comparison
NZ_CP100517.1 See Comparison
NZ_CP100543.1 See Comparison
NZ_CP100513.1 See Comparison
NZ_CP100499.1 See Comparison
NZ_CP100505.1 See Comparison
NZ_CP100524.1 See Comparison
NZ_CP100489.1 See Comparison
NZ_CP100549.1 See Comparison
NZ_CP100495.1 See Comparison
NZ_KX618704.1 See Comparison
NZ_MT158478.1 See Comparison
NZ_KX618701.1 See Comparison
NZ_KX618700.1 See Comparison
NZ_KX618702.1 See Comparison
NZ_KX618703.1 See Comparison
NZ_KX618698.1 See Comparison
NZ_KX618699.1 See Comparison
NZ_CP100483.1 See Comparison
NZ_MT859329.1 See Comparison
NZ_CP100481.1 See Comparison
NZ_CP100517.1 See Comparison
NZ_CP100543.1 See Comparison
NZ_CP100513.1 See Comparison
NZ_CP100499.1 See Comparison
NZ_CP100505.1 See Comparison
NZ_CP100524.1 See Comparison
NZ_CP100489.1 See Comparison
NZ_CP100549.1 See Comparison
NZ_CP100495.1 See Comparison
NZ_CP100483.1 See Comparison
NZ_MT158478.1 See Comparison
NZ_KX618704.1 See Comparison
NZ_KX618701.1 See Comparison
NZ_KX618700.1 See Comparison
NZ_KX618702.1 See Comparison
NZ_KX618703.1 See Comparison
NZ_KX618698.1 See Comparison
NZ_KX618699.1 See Comparison
NZ_MT859329.1 See Comparison
NZ_CP100483.1 See Comparison
NZ_CP100481.1 See Comparison
NZ_CP100517.1 See Comparison
NZ_CP100528.1 See Comparison
NZ_CP100543.1 See Comparison
NZ_CP100513.1 See Comparison
NZ_CP100499.1 See Comparison
NZ_CP100505.1 See Comparison
NZ_CP100524.1 See Comparison
NZ_CP100489.1 See Comparison
NZ_CP100549.1 See Comparison
NZ_CP100495.1 See Comparison
NZ_MT158478.1 See Comparison
NZ_MT859329.1 See Comparison
NZ_KX618704.1 See Comparison
NZ_KX618701.1 See Comparison
NZ_KX618700.1 See Comparison
NZ_KX618702.1 See Comparison
NZ_KX618703.1 See Comparison
NZ_KX618698.1 See Comparison
NZ_KX618699.1 See Comparison
NZ_CP100481.1 See Comparison
NZ_CP100517.1 See Comparison
NZ_CP100543.1 See Comparison
NZ_CP100513.1 See Comparison
NZ_CP100499.1 See Comparison
NZ_CP100505.1 See Comparison
NZ_CP100524.1 See Comparison
NZ_CP100489.1 See Comparison
NZ_CP100549.1 See Comparison
NZ_CP100495.1 See Comparison
NZ_MT158478.1 See Comparison


Identical Plasmids

100% Sequence Identity



Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore