Plasmid NZ_CP100505.1

Sequence

Nucleotide Information

Accession	NZ_CP100505.1
Description	Escherichia coli strain LH50-c plasmid pLH50-c-E, complete sequence
Source	refseq
Topology	circular
Length	46338 bp
GC Content	0.46 %
Created at NCBI	July 15, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_024223415.1
Assembly Coverage	None

Biosample

Curated Collection Information

Accession	29499317

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Switzerland
Original Query Type	name
Coordinates (Lat/Lon)	46.80/8.23
Address	Switzerland

ECOSYSTEM

Original Query	Gallus gallus domesticus,whole organism,pooled poultry feces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Gallus gallus (9031)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_KX618704.1	See Comparison
NZ_KX618701.1	See Comparison
NZ_KX618700.1	See Comparison
NZ_KX618702.1	See Comparison
NZ_KX618703.1	See Comparison
NZ_KX618698.1	See Comparison
NZ_KX618699.1	See Comparison
NZ_MT859329.1	See Comparison
NZ_KX618704.1	See Comparison
NZ_MT158478.1	See Comparison
NZ_KX618703.1	See Comparison
NZ_KX618698.1	See Comparison
NZ_KX618699.1	See Comparison
NZ_CP100483.1	See Comparison
NZ_CP100481.1	See Comparison
NZ_CP100517.1	See Comparison
NZ_CP100528.1	See Comparison
NZ_CP100543.1	See Comparison
NZ_CP100513.1	See Comparison
NZ_CP100499.1	See Comparison
NZ_CP100505.1	See Comparison
NZ_CP100524.1	See Comparison
NZ_CP100489.1	See Comparison
NZ_CP100549.1	See Comparison
NZ_CP100495.1	See Comparison
NZ_KX618701.1	See Comparison
NZ_KX618700.1	See Comparison
NZ_KX618702.1	See Comparison
NZ_CP100483.1	See Comparison
NZ_CP100483.1	See Comparison
NZ_CP100481.1	See Comparison
NZ_CP100517.1	See Comparison
NZ_CP100528.1	See Comparison
NZ_CP100543.1	See Comparison
NZ_CP100513.1	See Comparison
NZ_CP100499.1	See Comparison
NZ_CP100524.1	See Comparison
NZ_CP100489.1	See Comparison
NZ_CP100549.1	See Comparison
NZ_CP100495.1	See Comparison
NZ_MT158478.1	See Comparison
NZ_KX618703.1	See Comparison
NZ_KX618698.1	See Comparison
NZ_KX618699.1	See Comparison
NZ_MT859329.1	See Comparison
NZ_KX618704.1	See Comparison
NZ_KX618701.1	See Comparison
NZ_KX618700.1	See Comparison
NZ_KX618702.1	See Comparison
NZ_MT859329.1	See Comparison
NZ_CP100481.1	See Comparison
NZ_CP100517.1	See Comparison
NZ_CP100528.1	See Comparison
NZ_CP100543.1	See Comparison
NZ_CP100513.1	See Comparison
NZ_CP100499.1	See Comparison
NZ_CP100524.1	See Comparison
NZ_CP100489.1	See Comparison
NZ_CP100549.1	See Comparison
NZ_CP100495.1	See Comparison
NZ_KX618699.1	See Comparison
NZ_MT158478.1	See Comparison
NZ_MT859329.1	See Comparison
NZ_KX618704.1	See Comparison
NZ_KX618701.1	See Comparison
NZ_KX618700.1	See Comparison
NZ_KX618702.1	See Comparison
NZ_KX618703.1	See Comparison
NZ_KX618698.1	See Comparison
NZ_CP100483.1	See Comparison
NZ_CP100483.1	See Comparison
NZ_CP100481.1	See Comparison
NZ_CP100517.1	See Comparison
NZ_CP100528.1	See Comparison
NZ_CP100543.1	See Comparison
NZ_CP100513.1	See Comparison
NZ_CP100499.1	See Comparison
NZ_CP100524.1	See Comparison
NZ_CP100489.1	See Comparison
NZ_CP100549.1	See Comparison
NZ_CP100495.1	See Comparison
NZ_MT158478.1	See Comparison
NZ_KX618704.1	See Comparison
NZ_KX618701.1	See Comparison
NZ_KX618700.1	See Comparison
NZ_KX618702.1	See Comparison
NZ_KX618703.1	See Comparison
NZ_KX618698.1	See Comparison
NZ_KX618699.1	See Comparison
NZ_MT859329.1	See Comparison
NZ_CP100481.1	See Comparison
NZ_CP100517.1	See Comparison
NZ_CP100528.1	See Comparison
NZ_CP100543.1	See Comparison
NZ_CP100513.1	See Comparison
NZ_CP100499.1	See Comparison
NZ_CP100524.1	See Comparison
NZ_CP100489.1	See Comparison
NZ_CP100549.1	See Comparison
NZ_CP100495.1	See Comparison
NZ_MT158478.1	See Comparison
NZ_MT859329.1	See Comparison
NZ_KX618704.1	See Comparison
NZ_KX618701.1	See Comparison
NZ_KX618700.1	See Comparison
NZ_KX618702.1	See Comparison
NZ_KX618703.1	See Comparison
NZ_KX618698.1	See Comparison
NZ_KX618699.1	See Comparison
NZ_CP100483.1	See Comparison
NZ_CP100481.1	See Comparison
NZ_CP100517.1	See Comparison
NZ_CP100528.1	See Comparison
NZ_CP100543.1	See Comparison
NZ_CP100513.1	See Comparison
NZ_CP100499.1	See Comparison
NZ_CP100524.1	See Comparison
NZ_CP100489.1	See Comparison
NZ_CP100549.1	See Comparison
NZ_CP100495.1	See Comparison
NZ_MT158478.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore