Plasmid NZ_CP097240.1
Sequence
Nucleotide Information
| Accession | NZ_CP097240.1 |
|---|---|
| Description | Klebsiella pneumoniae strain 1 plasmid p70.8, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 70829 bp |
| GC Content | 0.53 % |
| Created at NCBI | May 19, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 27722563 |
|---|
PLASMID INFORMATION
| Genotype | ST14 |
|---|
GEOGRAPHICAL INFORMATION
| Original Query | 40.4406N;79.9959W |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 40.44/-80.00 |
| Address | BNY Mellon Center, 500, Grant Street, Chinatown, Downtown, Pittsburgh, Allegheny County, Pennsylvania, 15219, United States |
ECOSYSTEM
| Original Query | Homo sapiens,urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
|
| Host-associated Sex | female |
DISEASE
| Original Query | Subarachnoid hemorrhage |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_CP097235.1
- Description: Klebsiella pneumoniae strain 4 plasmid p70.8, complete sequence
- Source: refseq
- Created at NCBI: May 19, 2022
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 27722566 - GEOGRAPHICAL INFORMATION
- Original Query: 40.4406N;79.9959W
- Original Query Type: coordinates
- Address: BNY Mellon Center, 500, Grant Street, Chinatown, Downtown, Pittsburgh, Allegheny County, Pennsylvania, 15219, United States
- Coordinates (Lat/Lon): 40.44/-80.00
- ECOSYSTEM
- Original Query: Homo sapiens,Rectal Swab
- Classification: gastrointestinal_system,host_associated,rectal
- Host-associated Taxon:
- Homo sapiens (9606)
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaSHV-11 | copy | ||
| amrfinderplus | blaOXA-9 | copy | ||
| amrfinderplus | cmlA5 | copy | ||
| rgi | aadA | copy | ||
| rgi | EreA2 | copy | ||
| rgi | AAC(6')-Ib10 | copy | ||
| rgi | aadA | copy | ||
| amrfinderplus | sul2 | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | merE | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 89 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000204__CP008701_00115 | IncR | 8046 | 8941 | minus | 99.442 | 100 | 0 | 1626 |
| replicon | AF250878 | IncFIA | 40064 | 40450 | minus | 98.45 | 99 | 0 | 682 |
| oriT | NZ_CP016035 | MOBF | 42134 | 42392 | plus | 81.439 | 96 | 1.58e-50 | 206 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |