Plasmid NZ_CP006801.1

Sequence

Nucleotide Information

Accession NZ_CP006801.1
Description Klebsiella pneumoniae subsp. pneumoniae PittNDM01 plasmid p3, complete sequence
Source refseq
Topology circular
Length 70814 bp
GC Content 0.53 %
Created at NCBI March 1, 2015



Assembly

Genome Data Information

Accession GCF_000733255.1
Assembly Coverage 333


Biosample

Curated Collection Information
Accession 3081487

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query urine
Classification host_associated,urinary_system
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP021712.1 See Comparison
NZ_CP016919.1 See Comparison
NZ_CP028931.1 See Comparison
NZ_CP026753.1 See Comparison
NZ_CP097235.1 See Comparison
NZ_CP097230.1 See Comparison
NZ_CP097240.1 See Comparison
NZ_CP097235.1 See Comparison
NZ_CP091600.1 See Comparison
NZ_CP021712.1 See Comparison
NZ_CP028931.1 See Comparison
NZ_CP026753.1 See Comparison
NZ_CP016919.1 See Comparison
NZ_CP097230.1 See Comparison
NZ_CP097240.1 See Comparison
NZ_CP021712.1 See Comparison
NZ_CP091600.1 See Comparison
NZ_CP091600.1 See Comparison
NZ_CP016919.1 See Comparison
NZ_CP028931.1 See Comparison
NZ_CP026753.1 See Comparison
NZ_CP097235.1 See Comparison
NZ_CP097230.1 See Comparison
NZ_CP097240.1 See Comparison
NZ_CP028931.1 See Comparison
NZ_CP021712.1 See Comparison
NZ_CP016919.1 See Comparison
NZ_CP026753.1 See Comparison
NZ_CP016919.1 See Comparison
NZ_CP097235.1 See Comparison
NZ_CP097230.1 See Comparison
NZ_CP097240.1 See Comparison
NZ_CP091600.1 See Comparison
NZ_CP028931.1 See Comparison
NZ_CP021712.1 See Comparison
NZ_CP026753.1 See Comparison
NZ_CP097235.1 See Comparison
NZ_CP097230.1 See Comparison
NZ_CP097240.1 See Comparison
NZ_CP091600.1 See Comparison
NZ_CP021712.1 See Comparison
NZ_CP097235.1 See Comparison
NZ_CP016919.1 See Comparison
NZ_CP028931.1 See Comparison
NZ_CP026753.1 See Comparison
NZ_CP006801.1 See Comparison
NZ_CP097230.1 See Comparison
NZ_CP097240.1 See Comparison
NZ_CP016919.1 See Comparison
NZ_CP091600.1 See Comparison
NZ_CP021712.1 See Comparison
NZ_CP028931.1 See Comparison
NZ_CP026753.1 See Comparison
NZ_CP097235.1 See Comparison
NZ_CP097230.1 See Comparison
NZ_CP097240.1 See Comparison
NZ_CP091600.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2