Plasmid NZ_CP096978.1

Sequence

Nucleotide Information

Accession NZ_CP096978.1
Description Escherichia coli strain 17-07187 plasmid p17-07187_2, complete sequence
Source refseq
Topology circular
Length 75597 bp
GC Content 0.47 %
Created at NCBI May 12, 2022



Assembly

Genome Data Information

Accession GCF_023277345.1
Assembly Coverage 105


Biosample

Curated Collection Information
Accession 27988043

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 51.00N;9.00E
Original Query Type coordinates
Coordinates (Lat/Lon) 51.00/9.00
Address 35114, Haina (Kloster), Landkreis Waldeck-Frankenberg, Hesse, Germany

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query HUS
DOID/SYMP
  • Hemolyticuremic syndrome (DOID:12554 )
    • A kidney disease that is characterized by hemolytic anemia, thrombocytopenia, and renal failure caused by platelet thrombi in the microcirculation of the kidney and other organs.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP064388.1 See Comparison
NC_018662.1 See Comparison
NC_022743.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP027392.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NZ_CP136554.1 See Comparison
NC_018662.1 See Comparison
NC_022743.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP027392.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NC_018662.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP136554.1 See Comparison
NC_022743.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP027392.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP096978.1 See Comparison
NZ_CP064388.1 See Comparison
NC_022743.1 See Comparison
NC_018662.1 See Comparison
NZ_CP027392.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NC_022743.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP022087.2 See Comparison
NC_018662.1 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP027392.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP041001.1 See Comparison
NC_018662.1 See Comparison
NC_022743.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP027392.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NZ_CP136554.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore