Plasmid NZ_CP027392.1

Sequence

Nucleotide Information

Accession NZ_CP027392.1
Description Escherichia coli O104:H4 strain FDAARGOS_349 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 75562 bp
GC Content 0.47 %
Created at NCBI March 14, 2018



Assembly

Genome Data Information

Accession GCF_002983645.1
Assembly Coverage 13.6272


Biosample

Curated Collection Information
Accession 6173362

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Germany
Original Query Type name
Coordinates (Lat/Lon) 51.08/10.42
Address Germany

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 37Y
Host-associated Sex female

DISEASE
Original Query Hemolytic uremic syndrome
DOID/SYMP
  • Hemolyticuremic syndrome (DOID:12554 )
    • A kidney disease that is characterized by hemolytic anemia, thrombocytopenia, and renal failure caused by platelet thrombi in the microcirculation of the kidney and other organs.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP011332.1 See Comparison
NC_022743.1 See Comparison
NC_018654.1 See Comparison
NC_018666.1 See Comparison
NC_018662.1 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP031904.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP096978.1 See Comparison
NC_018666.1 See Comparison
NZ_CP086261.1 See Comparison
NZ_CP011332.1 See Comparison
NC_022743.1 See Comparison
NC_018662.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NC_018654.1 See Comparison
NZ_CP031904.1 See Comparison
NZ_CP096978.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP086261.1 See Comparison
NC_018654.1 See Comparison
NZ_CP011332.1 See Comparison
NC_022743.1 See Comparison
NC_018666.1 See Comparison
NC_018662.1 See Comparison
NZ_CP031904.1 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NC_018654.1 See Comparison
NC_018666.1 See Comparison
NC_018662.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP096978.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP086261.1 See Comparison
NZ_CP011332.1 See Comparison
NC_022743.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP031904.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NC_022743.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP086261.1 See Comparison
NZ_CP096978.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP011332.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP031904.1 See Comparison
NC_018654.1 See Comparison
NC_018666.1 See Comparison
NC_018662.1 See Comparison
NZ_CP096978.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP086261.1 See Comparison
NC_018654.1 See Comparison
NZ_CP011332.1 See Comparison
NC_022743.1 See Comparison
NC_018666.1 See Comparison
NC_018662.1 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP022087.2 See Comparison
NZ_CP031904.1 See Comparison
NZ_CP027392.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NZ_CP096978.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP011332.1 See Comparison
NZ_CP064388.1 See Comparison
NZ_CP086261.1 See Comparison
NC_022743.1 See Comparison
NZ_CP022087.2 See Comparison
NC_018654.1 See Comparison
NZ_CP041001.1 See Comparison
NZ_CP031904.1 See Comparison
NC_018666.1 See Comparison
NC_018662.1 See Comparison
NZ_CP023533.1 See Comparison
NZ_CP023530.1 See Comparison
NZ_CP136554.1 See Comparison
NZ_CP086261.1 See Comparison
NZ_CP096978.1 See Comparison
NZ_CP064388.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2