Plasmid NZ_CP096188.1

Sequence

Nucleotide Information

Accession	NZ_CP096188.1
Description	Enterobacter roggenkampii isolate C3-17 plasmid unnamed1, complete sequence
Source	refseq
Topology	circular
Length	115683 bp
GC Content	0.55 %
Created at NCBI	May 3, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Enterobacter roggenkampii (1812935)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Enterobacter (547)
Species	Enterobacter_roggenkampii (1812935)
Strain

Assembly

Genome Data Information

Accession	GCF_023195715.1
Assembly Coverage	691

Biosample

Curated Collection Information

Accession	27117675

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	35.70153025N;139.76415553E
Original Query Type	coordinates
Coordinates (Lat/Lon)	35.70/139.76
Address	Tokyo Medical and Dental University, Sotobori-dori Avenue, Yushima 1-chome, Bunkyō, Tokyo, 113-8431, Japan

ECOSYSTEM

Original Query	sink
Classification	anthropogenic
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP096188.1	See Comparison

Plasmid Visualization

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Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	arsR		copy
amrfinderplus	arsB		copy
amrfinderplus	arsA		copy
amrfinderplus	arsD		copy
amrfinderplus	arsC		copy
PGAG	repA		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	recombinase family protein		copy
PGAG	Tn3-like element Tn5403 family transposase		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 129 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	CP042519_00001	rep_cluster_2272	121	876	plus	99.074	100	0	1358
replicon	AF401292	IncFIC	115441	115683	plus	85.141	94	3.1999999999999998e-62	244
relaxase	NC_021501_00073	MOBF	103976	109213	plus	98.053	100	0	3343
mate-pair-formation	NC_021501_00097	MPF_F	82133	82435	plus	97.03	100	1.36e-59	202
mate-pair-formation	NC_006323_00096	MPF_F	83736	85127	plus	98.922	100	0	837
mate-pair-formation	NC_006323_00097	MPF_F	85152	85688	plus	99.441	100	6.86e-106	339
mate-pair-formation	NC_009378_00101	MPF_T	87263	89887	plus	99.543	99	0	1779
mate-pair-formation	NC_006323_00105	MPF_F	90291	90881	plus	100	92	2.24e-126	399
mate-pair-formation	NC_021501_00085	MPF_F	90881	91870	plus	95.455	100	0	627
mate-pair-formation	NC_021501_00084	MPF_F	91890	92516	plus	95.694	100	1.54e-123	391
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 10 of 14 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2